Factsheet for VIT_10s0003g01730.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
endoplasmic reticulum 1
nucleus 1
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29340.1	VIT_06s0009g01910.t01	AT2G41100.1	17360592
AT1G29340.1	VIT_08s0040g00470.t01	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21208	Soybean	mitochondrion	72.59	73.6
KRH11061	Soybean	mitochondrion, plastid	72.18	73.18
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	71.07	71.27
KRH59027	Soybean	mitochondrion	69.7	70.77
PGSC0003DMT400073254	Potato	cytosol	70.52	70.72
KRH42917	Soybean	mitochondrion	68.59	69.65
AT1G29340.1	Thale cress	plastid	68.18	67.9
CDY43332	Canola	mitochondrion	65.43	66.06
CDX90186	Canola	mitochondrion	64.6	65.78
CDX94661	Canola	plastid	64.19	65.54
Bra010834.1-P	Field mustard	mitochondrion	64.88	65.51
Bra032309.1-P	Field mustard	plastid	62.67	64.63
CDY48332	Canola	mitochondrion, plastid	62.53	64.49
CDX99816	Canola	plastid	63.09	63.26
TraesCS6B01G222200.1	Wheat	cytosol	32.51	56.32
GSMUA_Achr2P15530_001	Banana	mitochondrion	50.0	55.0
CDY37666	Canola	cytosol, plastid	48.9	53.71
Bra021899.1-P	Field mustard	plastid	48.9	53.71
GSMUA_Achr7P09440_001	Banana	mitochondrion	47.11	53.6
CDY43686	Canola	plastid	48.76	53.56
GSMUA_Achr10P...	Banana	mitochondrion	32.51	52.21
GSMUA_Achr9P28820_001	Banana	mitochondrion	42.98	52.09
Os02t0234300-01	Rice	cytosol	39.39	49.23
Zm00001d053544_P001	Maize	mitochondrion, plastid	44.49	45.82
TraesCS6D01G180400.1	Wheat	plastid	45.59	45.66
TraesCS6A01G190700.1	Wheat	plastid	45.45	45.52
EES04812	Sorghum	plastid	45.59	45.4
Zm00001d016225_P001	Maize	plastid	45.04	44.86
HORVU6Hr1G041430.8	Barley	mitochondrion	45.45	40.05
VIT_08s0058g01100.t01	Wine grape	plastid	34.16	36.63
VIT_13s0067g01460.t01	Wine grape	cytosol	33.61	35.47
VIT_13s0019g04710.t01	Wine grape	cytosol	30.03	34.71
VIT_06s0004g04530.t01	Wine grape	cytosol	31.54	33.58
VIT_01s0026g00190.t01	Wine grape	cytosol	30.99	32.94
VIT_04s0043g00840.t01	Wine grape	cytosol	20.39	32.53
VIT_00s0524g00030.t01	Wine grape	cytosol	20.11	32.52
VIT_01s0011g04770.t01	Wine grape	cytosol	28.51	32.39
VIT_17s0000g08080.t01	Wine grape	cytosol, mitochondrion	30.17	32.25
VIT_03s0038g03660.t01	Wine grape	cytosol	28.37	32.14
VIT_18s0001g14180.t01	Wine grape	cytosol	28.37	30.12
VIT_18s0001g09130.t01	Wine grape	cytosol	14.88	27.84
VIT_00s2269g00010.t01	Wine grape	plastid	15.84	25.44
VIT_07s0005g03520.t01	Wine grape	cytosol	26.17	24.14
VIT_07s0129g00590.t01	Wine grape	cytosol	27.27	23.35

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100253280	wikigene:100253280	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	ProteinID:CCB55709	ProteinID:CCB55709.1	UniProt:F6HMC1	EMBL:FN595992
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EntrezGene:LOC100253280	wikigene:LOC100253280	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF76	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	TIGR:TC56569	UniParc:UPI000210825D	InterPro:Ubox_domain
ArrayExpress:VIT_10s0003g01730	EnsemblPlantsGene:VIT_10s0003g01730	EnsemblPlants:VIT_10s0003g01730.t01	RefSeq:XP_002267576	RefSeq:XP_002267576.1	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6HMC1]

Coordinates

chr10:+:3197007..3199895

Molecular Weight (calculated)

79806.6 Da

IEP (calculated)

7.040

GRAVY (calculated)

-0.004

Length

726 amino acids

Sequence
(BLAST)

001: MASAAIVSSL RRRRSPSLEA FLAPVDLNEV ALVRTLATIS MELIFAFSDR PWPFQRKNSR SLIRKIEVFL VLLEFLRDCN LSLPSAAVLC FKELYLLLYR
101: SKILLDYCLQ SSKLWLLLQN QSISGHFHDL NQEISTLLDV FPMEELELTE DIREQLELLQ KQVRRAKLFL DKNDEGLRLR LYSFLDDFGS GRIPDPVELR
201: LFFVDRLGIR DAKSCRAEIE FLEEQIYSHE GDVEPNESEV EMSFGIKKPR KGLITQEIGD TFITVPKDFC CPISLDVMRD PVIISTGQTY DRTSISRWME
301: EGHCSCPKTG QMLAHPRLVP NRALRNLITQ WCTAYGITLD PPDSPDSVVE TFAAALPTKA AIEANKATAA LLVQQLASGS QGAKTVAARE IRLLAKTGKE
401: NRAYIAEAGA IPHLLKLLSS PNSVAQENSV TAMLNLSIYD KNKSRIMDED GCLGLIVEVL IFGHTTEARE NAAATLFSLS AVHDYKKRIA DEGGAVEALA
501: GLLREGTPRG RKDAVTALFN LSTHTDNCAR MVASGAVTAL VAALGTEGVA EEAAGALALI VRRPIGAEAV GREEMAVAGL LGMMRCGTPR GKENAVAALL
601: ELCRSGGTAA TERVLKAPAL AGLLQTLLFT GTKRARRKAA SLARVFQRCE NAALHFGGLG VGYAFARNSS ANTDASFSSE VSMQMPISVP FHFLLYFVMP
701: NYLTNQNEEF SKNGQVGNSI MWKSCF

Best Arabidopsis Sequence Match ( AT1G29340.1 )
(BLAST)

001: MASAAIFSSL RRRRSPSLEA FLAPVDLSGV ALVQTLASIS SEVVSCFTSV RFSFQRKNAR SLIRKIEIFV VLFEFLVDSN WGSTTTRTRA RRRSKSSVSE
101: STALLCLKEL YLLLYRSKIL VDYCAQSSKL WLLLQNPSIS GYFHDLNQEI STLLDVLPVN DLGLSDDIRE QIELLQRQSR KARLYIDKND ESLRESFYSF
201: LDGFENGKIP SSVDLRMFFV EKLGIRDSKS CRSEIEFLEE QIVNHDGDLE PTGSVINGFV AITRYCRFLL FGFEEDGMEW WIENNPKKPR KGFVAQEIGD
301: TFITVPKDFV CPISLDLMTD PVIISTGQTY DRNSIARWIE EGHCTCPKTG QMLMDSRIVP NRALKNLIVQ WCTASGISYE SEFTDSPNES FASALPTKAA
401: VEANKATVSI LIKYLADGSQ AAQTVAAREI RLLAKTGKEN RAYIAEAGAI PHLCRLLTSE NAIAQENSVT AMLNLSIYEK NKSRIMEEGD CLESIVSVLV
501: SGLTVEAQEN AAATLFSLSA VHEYKKRIAI VDQCVEALAL LLQNGTPRGK KDAVTALYNL STHPDNCSRM IEGGGVSSLV GALKNEGVAE EAAGALALLV
601: RQSLGAEAIG KEDSAVAGLM GMMRCGTPRG KENAVAALLE LCRSGGAAVA EKVLRAPAIA GLLQTLLFTG TKRARRKAAS LARVFQRREN AAMRSGVYGF
701: VGNTNGNRDG GFTTDVSVPI SISISVPVL

Arabidopsis Description

PUB17RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WA68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.