Factsheet for Bra021899.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43686	Canola	plastid	97.88	97.88
Bra010834.1-P	Field mustard	mitochondrion	60.82	55.91
Bra032309.1-P	Field mustard	plastid	56.73	53.27
KRH21208	Soybean	mitochondrion	55.98	51.68
KRH11061	Soybean	mitochondrion, plastid	55.82	51.54
KRH59027	Soybean	mitochondrion	54.61	50.49
KRH42917	Soybean	mitochondrion	54.46	50.35
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	54.46	49.72
PGSC0003DMT400073254	Potato	cytosol	54.46	49.72
VIT_10s0003g01730.t01	Wine grape	mitochondrion	53.71	48.9
GSMUA_Achr2P15530_001	Banana	mitochondrion	41.6	41.67
GSMUA_Achr10P...	Banana	mitochondrion	27.99	40.93
GSMUA_Achr9P28820_001	Banana	mitochondrion	36.91	40.73
GSMUA_Achr7P09440_001	Banana	mitochondrion	38.73	40.13
TraesCS6B01G222200.1	Wheat	cytosol	25.11	39.62
Os02t0234300-01	Rice	cytosol	34.19	38.9
EES04812	Sorghum	plastid	41.91	38.0
Zm00001d016225_P001	Maize	plastid	41.75	37.86
Zm00001d053544_P001	Maize	mitochondrion, plastid	40.24	37.73
TraesCS6D01G180400.1	Wheat	plastid	39.18	35.72
TraesCS6A01G190700.1	Wheat	plastid	39.03	35.59
Bra040513.1-P	Field mustard	cytosol	12.86	32.32
HORVU6Hr1G041430.8	Barley	mitochondrion	39.18	31.43
Bra019022.1-P	Field mustard	cytosol	31.62	31.01
Bra012355.1-P	Field mustard	plasma membrane	27.53	30.95
Bra001998.1-P	Field mustard	cytosol	27.69	30.65
Bra007105.1-P	Field mustard	cytosol	29.05	30.28
Bra016165.1-P	Field mustard	cytosol, plasma membrane	27.99	30.03
Bra024559.1-P	Field mustard	cytosol, plasma membrane	27.38	29.72
Bra035665.1-P	Field mustard	cytosol	27.99	28.37
Bra033820.1-P	Field mustard	cytosol	27.84	27.96
Bra018212.1-P	Field mustard	cytosol	27.53	27.96
Bra020360.1-P	Field mustard	cytosol	14.22	26.63
Bra031521.1-P	Field mustard	cytosol	27.08	26.44
Bra001006.1-P	Field mustard	plastid	14.07	26.27
Bra001247.1-P	Field mustard	cytosol	17.4	25.22
Bra027977.1-P	Field mustard	cytosol	24.81	25.15
Bra029642.1-P	Field mustard	cytosol	17.55	25.11
Bra040374.1-P	Field mustard	cytosol	16.79	24.61
Bra037117.1-P	Field mustard	cytosol, plastid	27.23	24.52
Bra019924.1-P	Field mustard	mitochondrion	24.81	23.6
Bra012713.1-P	Field mustard	cytosol	15.73	22.86
Bra012155.1-P	Field mustard	cytosol	22.69	22.76
Bra032180.1-P	Field mustard	cytosol	19.36	21.92
Bra007097.1-P	Field mustard	cytosol	22.84	21.51
Bra038470.1-P	Field mustard	plastid	15.13	21.37
Bra014787.1-P	Field mustard	cytosol	23.6	21.14
Bra006451.1-P	Field mustard	cytosol	14.83	20.98
Bra002153.1-P	Field mustard	cytosol	16.64	8.05
Bra006452.1-P	Field mustard	cytosol	15.13	6.02

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
EnsemblPlantsGene:Bra021899	EnsemblPlants:Bra021899.1	EnsemblPlants:Bra021899.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:M4DZF2	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698
PANTHER:PTHR23315	PANTHER:PTHR23315:SF76	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI00025438BB	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

AT1G29340 (E=4e-184) PUB17, ATPUB17 | PUB17 (PLANT U-BOX 17); ubiquitin-protein ligase

Coordinates

chrA04:+:15105913..15107898

Molecular Weight (calculated)

73505.9 Da

IEP (calculated)

7.658

GRAVY (calculated)

-0.047

Length

661 amino acids

Sequence
(BLAST)

001: MATDSAMFAS SRRRQSPSLE AFLSPVNLSD VPLLQTLSSI SSEILSCFSN ARFSFQRRNT RSLIRKVQVF AVLLQHLAPE SSLDPTAVLC FKELYLLLHH
101: SKFLLRYCAH SSKLWLLLQS PSLSSFFHDL SKDYSTLLDV LLPAESLCLN DDVREQVQLL HMQHYVDDNS DETLRNKLYS FLDEFENGSV PNSEELRFFF
201: FEKLAIKDPT SYREEIEFLE EQIKSHGCDL DPTRSVINGF IDITRYVMFL LFKIEDGNEI KKQRKRLISE EIENTFTTTL PKDFICSISL NLMNDPVIIS
301: TGQTYDRSSI ARWIHQEGRS TCPKTGQKLV DLSFVPNLAL RHLTTLWCQV TGLSHDSPKE SLPKVFQTRA STEANKATLS ILVQNLAHGS ELAAGEIRVL
401: TRTVTETRTL IVEAGAIPYL LRLLKSENAT AQENAVASIF NLSIDEANRS LIMKEHDCLE PIMSVLVSGL TMRAKEIAAA TLYTLSSVHD YKKAIANADG
501: CIEALALVLR NGTVRGKKDA VYALHSLWLH PDNCSLMVKR GGVSALVGAL GEEAVAEKVA WVLGVMATES LGAESIGREE TVVTGLMELM RCGRPRGKEK
601: AIATLLQLCT AGGAVVTEKV VKTPALAVLT RKLLLTGTDR AKRKAVSLSK VCKGCDQKTQ R

Best Arabidopsis Sequence Match ( AT1G29340.1 )
(BLAST)

001: MASAAIFSSL RRRRSPSLEA FLAPVDLSGV ALVQTLASIS SEVVSCFTSV RFSFQRKNAR SLIRKIEIFV VLFEFLVDSN WGSTTTRTRA RRRSKSSVSE
101: STALLCLKEL YLLLYRSKIL VDYCAQSSKL WLLLQNPSIS GYFHDLNQEI STLLDVLPVN DLGLSDDIRE QIELLQRQSR KARLYIDKND ESLRESFYSF
201: LDGFENGKIP SSVDLRMFFV EKLGIRDSKS CRSEIEFLEE QIVNHDGDLE PTGSVINGFV AITRYCRFLL FGFEEDGMEW WIENNPKKPR KGFVAQEIGD
301: TFITVPKDFV CPISLDLMTD PVIISTGQTY DRNSIARWIE EGHCTCPKTG QMLMDSRIVP NRALKNLIVQ WCTASGISYE SEFTDSPNES FASALPTKAA
401: VEANKATVSI LIKYLADGSQ AAQTVAAREI RLLAKTGKEN RAYIAEAGAI PHLCRLLTSE NAIAQENSVT AMLNLSIYEK NKSRIMEEGD CLESIVSVLV
501: SGLTVEAQEN AAATLFSLSA VHEYKKRIAI VDQCVEALAL LLQNGTPRGK KDAVTALYNL STHPDNCSRM IEGGGVSSLV GALKNEGVAE EAAGALALLV
601: RQSLGAEAIG KEDSAVAGLM GMMRCGTPRG KENAVAALLE LCRSGGAAVA EKVLRAPAIA GLLQTLLFTG TKRARRKAAS LARVFQRREN AAMRSGVYGF
701: VGNTNGNRDG GFTTDVSVPI SISISVPVL

Arabidopsis Description

PUB17RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WA68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.