Factsheet for Bra012713.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 5
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90518	Canola	plastid	98.24	98.24
Bra038470.1-P	Field mustard	plastid	89.89	87.39
AT4G16490.1	Thale cress	plastid	88.13	84.96
VIT_00s2269g00010.t01	Wine grape	plastid	72.75	73.23
KRH11541	Soybean	plastid	72.75	72.43
KRH51173	Soybean	cytosol	67.47	71.73
KRH36562	Soybean	plastid	72.09	71.62
KRH01984	Soybean	cytosol	66.59	71.29
PGSC0003DMT400034564	Potato	nucleus, plastid	70.11	69.65
Solyc11g012440.1.1	Tomato	cytosol, plastid	69.67	69.06
PGSC0003DMT400060674	Potato	plastid	68.35	68.96
Solyc04g014810.2.1	Tomato	plastid	68.13	68.74
HORVU7Hr1G038870.1	Barley	plastid	36.26	57.49
GSMUA_Achr4P06990_001	Banana	plastid	50.11	56.58
Bra040513.1-P	Field mustard	cytosol	31.65	54.75
GSMUA_Achr4P11070_001	Banana	cytosol	50.77	54.74
GSMUA_Achr3P29830_001	Banana	cytosol	49.67	54.33
GSMUA_Achr1P22790_001	Banana	mitochondrion	52.31	52.54
HORVU2Hr1G036080.15	Barley	plastid	52.31	51.97
Os07t0584900-01	Rice	plastid	53.19	51.82
TraesCS2A01G190800.1	Wheat	cytosol	49.45	51.61
EER97453	Sorghum	plastid	52.97	51.5
Zm00001d021951_P001	Maize	plastid	52.53	51.4
TraesCS2D01G197200.1	Wheat	plastid	51.65	51.2
TraesCS2B01G216300.1	Wheat	plastid	51.43	51.09
Zm00001d006705_P001	Maize	plastid	52.09	51.08
Bra001006.1-P	Field mustard	plastid	38.68	49.72
Bra020360.1-P	Field mustard	cytosol	37.14	47.88
Bra037117.1-P	Field mustard	cytosol, plastid	34.73	21.53
Bra012155.1-P	Field mustard	cytosol	30.99	21.4
Bra007097.1-P	Field mustard	cytosol	32.97	21.37
Bra007105.1-P	Field mustard	cytosol	29.67	21.29
Bra024559.1-P	Field mustard	cytosol, plasma membrane	27.47	20.53
Bra012355.1-P	Field mustard	plasma membrane	26.37	20.41
Bra001247.1-P	Field mustard	cytosol	20.44	20.39
Bra014787.1-P	Field mustard	cytosol	32.97	20.33
Bra016165.1-P	Field mustard	cytosol, plasma membrane	27.03	19.97
Bra040374.1-P	Field mustard	cytosol	19.12	19.29
Bra029642.1-P	Field mustard	cytosol	19.56	19.26
Bra018212.1-P	Field mustard	cytosol	27.47	19.2
Bra033820.1-P	Field mustard	cytosol	27.69	19.15
Bra035665.1-P	Field mustard	cytosol	26.81	18.71
Bra027977.1-P	Field mustard	cytosol	26.15	18.25
Bra001998.1-P	Field mustard	cytosol	21.76	16.58
Bra032309.1-P	Field mustard	plastid	25.05	16.19
Bra032180.1-P	Field mustard	cytosol	20.66	16.1
Bra010834.1-P	Field mustard	mitochondrion	25.27	15.99
Bra021899.1-P	Field mustard	plastid	22.86	15.73
Bra006451.1-P	Field mustard	cytosol	15.38	14.99
Bra019022.1-P	Field mustard	cytosol	21.76	14.69
Bra031521.1-P	Field mustard	cytosol	19.12	12.85
Bra019924.1-P	Field mustard	mitochondrion	17.8	11.65
Bra002153.1-P	Field mustard	cytosol	19.78	6.59
Bra006452.1-P	Field mustard	cytosol	15.38	4.21

Protein Annotations

EnsemblPlants:Bra012713.1	EnsemblPlants:Bra012713.1-P	EnsemblPlantsGene:Bra012713	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	InterPro:IPR000225	InterPro:IPR011989
PANTHER:PTHR23315	PANTHER:PTHR23315:SF129	PFAM:PF00514	PFscan:PS50176	SEG:seg	SMART:SM00185
SUPFAM:SSF48371	UniParc:UPI00025408BC	UniProt:M4D8A3	MapMan:35.1	:	:

Description

AT4G16490 (E=1e-194) | binding

Coordinates

chrA03:-:22586734..22588185

Molecular Weight (calculated)

48428.8 Da

IEP (calculated)

6.028

GRAVY (calculated)

-0.087

Length

455 amino acids

Sequence
(BLAST)

001: MVSVEDSLSH SNSTRFQSTT NFYGSPSSPS TERIHRQAGR SMRTVRSNFY QSGDQSCSFV GDEYLSDSVV DMRLGELASK NTNSSPHSKA SSLIDEVFLD
101: ISQAFSDFSA CSSDISGELH RLACLPSPDV NENVGVQDPE PCLGFLERES FSTEIIECIS PEDLQPTVKL CVDGLRSSSV AIKRSAAAKL RLLAKNRADN
201: RLLIGESGAI QALIPLLRCN DPLTQEHAVT ALLNLSLHDQ NKSVIVAGGA IKPLVWVLKT GTETSKQNAA CALLSLALVE ENKNSIGACG AIPPLVSLIL
301: NGSCRGKKDA VTTLYKLCTL RQNKERAVAA GAVKPLVELV GEEGTGMAEK AMVVLSSLAG VEEGKEAIVE EGGIVALVEA IEDGSVKGKE FAVLTLLQLC
401: GESVRNRGLL VREGAIPPLV GLSQSGSVSV RAKRKAERLL GYLREPRKEG SSSSS

Best Arabidopsis Sequence Match ( AT4G16490.1 )
(BLAST)

001: MVSVEEPLSH SNSTRFPLTT DFYGSSSPSA ARLHRQAGRS MRTVRSNFYQ SGDQSCSFVG SIGDKSEYAS EFLSDSVIDM RLGELALKNS NSLNSNASSM
101: KEEAFLDISQ AFSDFSACSS DISGELQRLA CLPSPEADRN ESGGDNEAEH DPELEREPCL GFLQRENFST EIIECISPED LQPTVKLCID GLRSSSVAIK
201: RSAAAKLRLL AKNRADNRVL IGESGAIQAL IPLLRCNDPW TQEHAVTALL NLSLHDQNKA VIAAGGAIKS LVWVLKTGTE TSKQNAACAL LSLALLEENK
301: GSIGACGAIP PLVSLLLNGS CRGKKDALTT LYKLCTLQQN KERAVTAGAV KPLVDLVAEE GTGMAEKAMV VLSSLAAIDD GKEAIVEEGG IAALVEAIED
401: GSVKGKEFAI LTLLQLCSDS VRNRGLLVRE GAIPPLVGLS QSGSVSVRAK RKAERLLGYL REPRKEASSS SP

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JMH0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.