Factsheet for GSMUA_Achr4P11070_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P06990_001	Banana	plastid	79.86	83.62
GSMUA_Achr3P29830_001	Banana	cytosol	77.49	78.61
GSMUA_Achr1P22790_001	Banana	mitochondrion	73.7	68.65
HORVU7Hr1G038870.1	Barley	plastid	43.6	64.11
TraesCS2A01G190800.1	Wheat	cytosol	66.11	63.99
HORVU2Hr1G036080.15	Barley	plastid	66.35	61.14
TraesCS2D01G197200.1	Wheat	plastid	66.35	61.0
TraesCS2B01G216300.1	Wheat	plastid	66.11	60.92
Os07t0584900-01	Rice	plastid	67.3	60.81
EER97453	Sorghum	plastid	67.3	60.68
Zm00001d021951_P001	Maize	plastid	66.35	60.22
Zm00001d006705_P001	Maize	plastid	64.93	59.05
VIT_00s2269g00010.t01	Wine grape	plastid	57.82	53.98
KRH51173	Soybean	cytosol	54.74	53.97
KRH11541	Soybean	plastid	58.29	53.83
KRH01984	Soybean	cytosol	54.03	53.65
KRH36562	Soybean	plastid	57.58	53.06
Solyc04g014810.2.1	Tomato	plastid	55.45	51.88
PGSC0003DMT400034564	Potato	nucleus, plastid	55.69	51.31
PGSC0003DMT400060674	Potato	plastid	54.74	51.22
Bra012713.1-P	Field mustard	cytosol	54.74	50.77
Solyc11g012440.1.1	Tomato	cytosol, plastid	55.21	50.76
GSMUA_Achr9P12570_001	Banana	cytosol	36.02	50.67
CDX90518	Canola	plastid	54.5	50.55
CDY09688	Canola	cytosol	54.03	50.22
Bra038470.1-P	Field mustard	plastid	55.45	50.0
GSMUA_Achr4P03430_001	Banana	cytosol	31.04	48.7
AT4G16490.1	Thale cress	plastid	54.27	48.52
GSMUA_Achr6P07710_001	Banana	cytosol	39.1	46.22
GSMUA_Achr3P18890_001	Banana	cytosol	37.68	44.29
GSMUA_Achr10P...	Banana	cytosol	38.86	44.09
GSMUA_Achr4P14130_001	Banana	cytosol	34.12	41.5
GSMUA_Achr4P10960_001	Banana	endoplasmic reticulum	37.2	38.67
GSMUA_Achr7P26200_001	Banana	extracellular, golgi	35.31	35.99
GSMUA_Achr5P16030_001	Banana	cytosol	38.63	34.61
GSMUA_Achr10P...	Banana	cytosol	23.93	27.01
GSMUA_Achr6P06560_001	Banana	cytosol	23.7	26.81
GSMUA_Achr4P01530_001	Banana	plasma membrane	36.97	25.53
GSMUA_Achr8P25140_001	Banana	plastid	22.75	22.86
GSMUA_Achr9P01670_001	Banana	cytosol	24.41	22.1
GSMUA_Achr6P36530_001	Banana	cytosol	34.12	21.82
GSMUA_Achr5P21360_001	Banana	cytosol	34.36	19.1
GSMUA_Achr3P06160_001	Banana	plastid	24.88	18.52
GSMUA_Achr9P14560_001	Banana	cytosol	24.64	17.78
GSMUA_Achr3P00280_001	Banana	cytosol	24.88	17.41
GSMUA_Achr10P...	Banana	cytosol	23.46	15.81
GSMUA_Achr1P24290_001	Banana	cytosol	22.27	15.38
GSMUA_Achr4P00200_001	Banana	plastid	25.36	15.2
GSMUA_Achr2P15530_001	Banana	mitochondrion	23.46	15.0
GSMUA_Achr9P15600_001	Banana	cytosol	23.7	14.79
GSMUA_Achr7P22130_001	Banana	cytosol	21.33	14.22
GSMUA_Achr6P34170_001	Banana	cytosol	22.27	14.16
GSMUA_Achr5P28670_001	Banana	cytosol	17.54	12.98
GSMUA_Achr9P28820_001	Banana	mitochondrion	18.25	12.85
GSMUA_Achr4P04900_001	Banana	cytosol	15.64	12.5
GSMUA_Achr7P09440_001	Banana	mitochondrion	18.72	12.38
GSMUA_Achr4P05030_001	Banana	cytosol	15.17	12.21
GSMUA_Achr10P...	Banana	cytosol	22.99	11.23
GSMUA_Achr5P07140_001	Banana	cytosol	16.11	10.83
GSMUA_Achr10P...	Banana	mitochondrion	7.11	6.64

Protein Annotations

EnsemblPlants:GSMUA_Achr4P11070_001	EnsemblPlants:GSMUA_Achr4T11070_001	EnsemblPlantsGene:GSMUA_Achr4G11070_001	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	InterPro:IPR000225	InterPro:IPR011989
PANTHER:PTHR23315	PANTHER:PTHR23315:SF129	PFAM:PF00514	PFscan:PS50176	SEG:seg	SMART:SM00185
SUPFAM:SSF48371	UniParc:UPI000295862B	UniProt:M0SMX2	MapMan:35.1	:	:

Description

Putative U-box domain-containing protein 4 [Source:GMGC_GENE;Acc:GSMUA_Achr4G11070_001]

Coordinates

chr4:-:7963314..7965615

Molecular Weight (calculated)

43293.8 Da

IEP (calculated)

5.372

GRAVY (calculated)

0.061

Length

422 amino acids

Sequence
(BLAST)

001: MRTVRSNVFR SDSPPDAPPA AGSAAVSENL TDSVVDFQLQ ELAVGPPRSS DPKCAAASVE SAAELLELSR DFSDCSSVNS DISGELERLA SVPRTVAPTI
101: PAAAGPDDLE ALGLGFGSSE IVERTSVESV EPAVRACMEG LGSSSPEKKR AAAAGIRLLA KHRSEFRELI GASGAIPSLV PLLKSTDPAA QENAVTALLN
201: LSLEEANKGP IMAAGAIKPL VYALRTGTAV AKQNAACALL SLSMVEENRS TIGACGAIPP LVALLVGGTS RGKKDALTTL YKLCSARRNK ERAVSAGAVP
301: PLVELVAERG GGTAEKALVV LGSLAAVPEG RAAVVEAGGI PVLVDAVEAG PTRGREFAVH ALLQLCADSE RNRGLVVGEG VIPPLVALSQ TGSSRAKHKA
401: ETLLRFLREQ RQDDGATPAT AV

Best Arabidopsis Sequence Match ( AT4G16490.1 )
(BLAST)

001: MVSVEEPLSH SNSTRFPLTT DFYGSSSPSA ARLHRQAGRS MRTVRSNFYQ SGDQSCSFVG SIGDKSEYAS EFLSDSVIDM RLGELALKNS NSLNSNASSM
101: KEEAFLDISQ AFSDFSACSS DISGELQRLA CLPSPEADRN ESGGDNEAEH DPELEREPCL GFLQRENFST EIIECISPED LQPTVKLCID GLRSSSVAIK
201: RSAAAKLRLL AKNRADNRVL IGESGAIQAL IPLLRCNDPW TQEHAVTALL NLSLHDQNKA VIAAGGAIKS LVWVLKTGTE TSKQNAACAL LSLALLEENK
301: GSIGACGAIP PLVSLLLNGS CRGKKDALTT LYKLCTLQQN KERAVTAGAV KPLVDLVAEE GTGMAEKAMV VLSSLAAIDD GKEAIVEEGG IAALVEAIED
401: GSVKGKEFAI LTLLQLCSDS VRNRGLLVRE GAIPPLVGLS QSGSVSVRAK RKAERLLGYL REPRKEASSS SP

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JMH0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.