Factsheet for GSMUA_Achr9P14560_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P06160_001	Banana	plastid	63.59	65.61
PGSC0003DMT400082693	Potato	cytosol	17.78	42.62
TraesCS2A01G475600.1	Wheat	cytosol, plasma membrane	47.35	40.09
Zm00001d050308_P001	Maize	mitochondrion, plasma membrane	47.35	39.91
TraesCS2D01G475600.1	Wheat	cytosol, plasma membrane	46.67	39.62
PGSC0003DMT400090858	Potato	cytosol, mitochondrion	30.77	39.56
OQU80426	Sorghum	endoplasmic reticulum, plasma membrane	48.03	39.36
TraesCS2B01G499300.1	Wheat	plasma membrane	46.32	39.33
Os09t0378700-00	Rice	plasma membrane, plastid	47.52	39.04
Zm00001d020332_P001	Maize	cytosol	46.15	38.68
VIT_17s0000g08080.t01	Wine grape	cytosol, mitochondrion	44.27	38.14
VIT_01s0026g00190.t01	Wine grape	cytosol	44.27	37.92
HORVU5Hr1G059280.1	Barley	cytosol, plasma membrane	45.3	37.8
TraesCS5A01G198800.1	Wheat	cytosol, plasma membrane	44.79	37.38
TraesCS5B01G197400.1	Wheat	cytosol, plasma membrane, plastid	44.79	37.38
KXG35540	Sorghum	plasma membrane	45.64	37.29
TraesCS5D01G204700.1	Wheat	cytosol, plasma membrane	44.44	37.09
Os08t0415600-00	Rice	cytosol	44.96	36.68
PGSC0003DMT400062931	Potato	cytosol	42.56	36.51
KRH03317	Soybean	cytosol, plastid	41.88	36.24
Solyc03g114160.1.1	Tomato	cytosol	41.88	35.92
KRH54418	Soybean	cytosol, plastid	40.68	34.85
PGSC0003DMT400095861	Potato	cytosol, plasma membrane	32.14	33.57
GSMUA_Achr9P12570_001	Banana	cytosol	17.09	33.33
Solyc05g005670.1.1	Tomato	cytosol, mitochondrion	38.12	32.55
KRH69547	Soybean	cytosol, plastid	39.32	32.26
AT1G60190.1	Thale cress	cytosol, plastid	35.73	30.47
Bra031521.1-P	Field mustard	cytosol	34.19	29.54
CDY24520	Canola	cytosol	34.02	29.53
Bra019924.1-P	Field mustard	mitochondrion	35.04	29.5
CDX93411	Canola	mitochondrion	34.87	29.23
CDY54132	Canola	cytosol	33.5	28.82
CDY55050	Canola	cytosol	34.02	28.59
AT1G10560.1	Thale cress	cytosol	33.33	27.98
GSMUA_Achr4P03430_001	Banana	cytosol	12.31	26.77
GSMUA_Achr8P25140_001	Banana	plastid	18.97	26.43
GSMUA_Achr6P06560_001	Banana	cytosol	16.58	26.01
GSMUA_Achr10P...	Banana	cytosol	16.58	25.94
GSMUA_Achr4P06990_001	Banana	plastid	17.09	24.81
GSMUA_Achr4P11070_001	Banana	cytosol	17.78	24.64
GSMUA_Achr3P29830_001	Banana	cytosol	17.27	24.28
GSMUA_Achr2P15530_001	Banana	mitochondrion	27.01	23.94
GSMUA_Achr6P07710_001	Banana	cytosol	14.53	23.81
GSMUA_Achr4P14130_001	Banana	cytosol	13.68	23.05
GSMUA_Achr9P28820_001	Banana	mitochondrion	23.59	23.04
GSMUA_Achr3P00280_001	Banana	cytosol	23.59	22.89
GSMUA_Achr10P...	Banana	mitochondrion	17.44	22.57
GSMUA_Achr3P18890_001	Banana	cytosol	13.85	22.56
GSMUA_Achr9P01670_001	Banana	cytosol	17.78	22.32
GSMUA_Achr10P...	Banana	cytosol	14.19	22.31
GSMUA_Achr1P22790_001	Banana	mitochondrion	17.27	22.3
GSMUA_Achr1P24290_001	Banana	cytosol	23.25	22.26
GSMUA_Achr7P09440_001	Banana	mitochondrion	23.93	21.94
GSMUA_Achr7P22130_001	Banana	cytosol	23.42	21.64
GSMUA_Achr5P28670_001	Banana	cytosol	20.85	21.4
GSMUA_Achr4P00200_001	Banana	plastid	25.47	21.16
GSMUA_Achr4P01530_001	Banana	plasma membrane	22.05	21.11
GSMUA_Achr4P10960_001	Banana	endoplasmic reticulum	14.53	20.94
GSMUA_Achr6P36530_001	Banana	cytosol	23.59	20.91
GSMUA_Achr7P26200_001	Banana	extracellular, golgi	14.36	20.29
GSMUA_Achr4P05030_001	Banana	cytosol	17.95	20.04
GSMUA_Achr10P...	Banana	cytosol	21.37	19.97
GSMUA_Achr4P04900_001	Banana	cytosol	17.78	19.7
CDY04344	Canola	cytosol	10.6	19.44
GSMUA_Achr6P34170_001	Banana	cytosol	21.54	18.98
GSMUA_Achr9P15600_001	Banana	cytosol	21.88	18.93
CDY04342	Canola	cytosol	10.6	18.62
GSMUA_Achr5P16030_001	Banana	cytosol	14.7	18.26
GSMUA_Achr5P07140_001	Banana	cytosol	19.49	18.15
GSMUA_Achr5P21360_001	Banana	cytosol	21.37	16.47
GSMUA_Achr10P...	Banana	cytosol	22.22	15.05

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
EnsemblPlantsGene:GSMUA_Achr9G14560_001	EnsemblPlants:GSMUA_Achr9P14560_001	EnsemblPlants:GSMUA_Achr9T14560_001	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:M0U0B4	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF116	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0002957228
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

Putative U-box domain-containing protein 19 [Source:GMGC_GENE;Acc:GSMUA_Achr9G14560_001]

Coordinates

chr9:-:9502271..9504578

Molecular Weight (calculated)

63110.7 Da

IEP (calculated)

8.480

GRAVY (calculated)

0.126

Length

585 amino acids

Sequence
(BLAST)

001: MPHPSDSRKF LTLPAVQPGA DVSPAALLCA LVALADEILA LRSNPFPIHR RSAREAIRQV GAILEFLADV RGRGSALPAS AAVGFSELHV ALQKLRHLLQ
101: DCARPGARLW VLMRSELVSN EFQMLVRSIS TALDVLPLAS IDAAPELKEL VRLVREQAWK ATTYDRASIS KWLKSGCLTC PVTGEKLANN SLVPNSAIRN
201: LMEQFCHETK VTIPEPNGKP KRDLTRTATP LSAAAAGATR MVAAFLVHKL AVGTNQEKNK AAHEIRKLSK SNIFNRACLV EAGSVPWLLY HFSSSDPSIQ
301: DNAVAALMSL SKHPSGGKAI VEAGGLGLIV DVIRVALRVE AQQNAAAILF YLSSDEVYRT EIGRMAEAIP TLVELLREGT YRGRKNAIVT LYGLLPCPDN
401: LRKILAAGAI PALASILSSD RADLVNDAVA VLAKIAEGHD GTTAILESSA VPHLVAFLRS STSRSGRENC VSALLSLCNN GGAKVVSLLE QIPVLMPSLY
501: SLVTEGSPQA GKKARSLLNH IHHLHDQEDL IMMGQCSPFV SSVGAGISAL FLEELQSSMV SNRHHNLYLY IDIYYINMCN FSESI

Best Arabidopsis Sequence Match ( AT1G60190.1 )
(BLAST)

001: MIHTPTGSSR RILTFPAVNP CESISLTTLV DSLLQLAGEI LSFKPKHFST NKRSVKETLR HVQTLVIFFE ELRIQIRVGS IPAGRSVILS LSELHVIFQK
101: LKFLLDDCTR DGAKLYMLMN SGQVSAHFRD LTRSISTSLD TFPVRSVDLP GEVNELIYLV MRQTRKSEAR PDRDDKRAID SVYWFFNLFE NRINPNSDEI
201: LRVLDHIGVR KWRDCVKEID FLREEISVGK KSNIEIELLS NLMGFICYCR CVILRGIDVD DEEKDKEEDD LMMVRSLNVD DLRCPISLEI MSDPVVLESG
301: HTYDRSSITK WFASGNITCP KTGKTLVSTV LVDNFSVKQV IQSYSKQNGV VMGQKGKKKV DVAESLAAEE AGKLTAEFLA GELIKGDEEE MVKALVEIRI
401: LTKTSTFYRS CLVEAGVVES LMKILRSDDP RIQENAMAGI MNLSKDIAGK TRIVGEDGGG LRLIVEVLND GARRESRQYA AAALFYLSSL GDYSRLIGEI
501: SDAIPGLVRI VKSCDYGDSA KRNALIAIRS LLMNQPDNHW RILAAGIVPV LLDLVKSEEI SDGVTADSMA ILAKMAEYPD GMISVLRRGG LKLAVKILGS
601: SEVSPATKQH CVALLLNLCH NGGSDVVGSL AKNPSIMGSL YTASSNGELG GGKKASALIK MIHEFQERKT GPGEPVLERE RFVHAW

Arabidopsis Description

PUB19U-box domain-containing protein 19 [Source:UniProtKB/Swiss-Prot;Acc:O80742]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.