Factsheet for TraesCS5B01G197400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, plastid

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 1
extracellular 1
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G204700.1	Wheat	cytosol, plasma membrane	96.72	96.72
TraesCS5A01G198800.1	Wheat	cytosol, plasma membrane	96.29	96.29
HORVU5Hr1G059280.1	Barley	cytosol, plasma membrane	94.86	94.86
Os09t0378700-00	Rice	plasma membrane, plastid	71.9	70.79
Zm00001d020332_P001	Maize	cytosol	70.33	70.63
KXG35540	Sorghum	plasma membrane	71.18	69.69
TraesCS2B01G499300.1	Wheat	plasma membrane	59.63	60.67
GSMUA_Achr9P14560_001	Banana	cytosol	37.38	44.79
GSMUA_Achr3P06160_001	Banana	plastid	33.81	41.8
VIT_17s0000g08080.t01	Wine grape	cytosol, mitochondrion	38.37	39.62
VIT_01s0026g00190.t01	Wine grape	cytosol	38.52	39.53
PGSC0003DMT400082693	Potato	cytosol	13.41	38.52
PGSC0003DMT400095861	Potato	cytosol, plasma membrane	29.39	36.79
KRH03317	Soybean	cytosol, plastid	35.38	36.69
KRH69547	Soybean	cytosol, plastid	36.95	36.33
PGSC0003DMT400062931	Potato	cytosol	35.24	36.22
KRH54418	Soybean	cytosol, plastid	35.24	36.16
CDY55050	Canola	cytosol	35.38	35.63
Solyc05g005670.1.1	Tomato	cytosol, mitochondrion	34.66	35.47
AT1G60190.1	Thale cress	cytosol, plastid	34.66	35.42
Solyc03g114160.1.1	Tomato	cytosol	34.24	35.19
CDX93411	Canola	mitochondrion	34.95	35.1
AT1G10560.1	Thale cress	cytosol	34.81	35.01
Bra019924.1-P	Field mustard	mitochondrion	34.66	34.96
PGSC0003DMT400090858	Potato	cytosol, mitochondrion	22.68	34.95
CDY24520	Canola	cytosol	33.1	34.42
Bra031521.1-P	Field mustard	cytosol	32.95	34.12
CDY54132	Canola	cytosol	32.95	33.97
CDY04344	Canola	cytosol	14.84	32.6
CDY04342	Canola	cytosol	14.98	31.53
TraesCS3B01G443200.1	Wheat	cytosol, endoplasmic reticulum	10.41	28.74
TraesCS6B01G222200.1	Wheat	cytosol	16.12	26.97
TraesCS1B01G310100.1	Wheat	plastid	25.68	26.71
TraesCS3B01G377600.1	Wheat	plastid	25.82	26.35
TraesCS6B01G324000.1	Wheat	cytosol	23.11	25.19
TraesCS7B01G186600.1	Wheat	cytosol	23.11	25.16
TraesCS5B01G087500.1	Wheat	cytosol	22.82	23.46
TraesCS7B01G473200.1	Wheat	cytosol	22.4	23.29
TraesCS2B01G213900.1	Wheat	cytosol	11.98	23.27
TraesCS2B01G216300.1	Wheat	plastid	15.12	23.14
TraesCS4B01G206900.1	Wheat	plastid	24.11	22.06
TraesCS2B01G294100.1	Wheat	nucleus	14.27	21.74
TraesCS3B01G422200.1	Wheat	cytosol	12.55	19.91
TraesCS3B01G443500.1	Wheat	cytosol	14.55	19.28
TraesCS3B01G591000.1	Wheat	cytosol	20.4	17.21

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF229	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS5B01G197400	EnsemblPlants:TraesCS5B01G197400.1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
TIGR:cd16664	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5B:+:355902425..355904913

Molecular Weight (calculated)

75007.9 Da

IEP (calculated)

7.982

GRAVY (calculated)

0.139

Length

701 amino acids

Sequence
(BLAST)

001: MPAPTPPRNQ PKRRRPLALP AVCPCEGIAP EPLLASVVSL TADVASRRAG DASAFPVLRR GTRQAVRLAG LLLAFLEEIQ DATATLSYSA VVGLTELHVA
101: MQKMRFLLTD CARRGGRLWV LVNAELIASE LRLCLGSVAA AMDVLPRCIV DASVESGELG RLVSDQAWSV VVRPDAGDKL AVRSIRSIMD TFKRGVAPEA
201: DDVMRVLRRI RVESWFQCSE EIAYLDGELS ARFDAGDENS SEVVLLNNLM AFLVYCRVVL FDHIDSKQSD ATAVRPATCP EWIRPEALQC PITLELMTDP
301: VTVSTGQTYD RASITRWMKA GCRTCPVTGE KLRTADLVPN AALCGIIERM LLSNGVSLPE TSSRHHHGDA DSSAATFSPS ATGAARLAVS YIVGQFSTGS
401: TEERRKATSE ARKLSKHSVF YRALFVEANA VPWLLCLLSC MDVSVQDNAV ASLLNLSKHP GGRTALVEAG GIGLVVDIVN VGAKAETQQN AVAILFYLSS
501: NAEYAEEIGR FPEAIPTLVR LIKEGAHRGR KNAMVSLYGL LQSPSNHAKA VAAGAVVVLA GLLSSDRDGD LACDTVSLLA RIAEQPAGAQ AVLARAGLVA
601: HLVEFLAASS SRSGKDHCVG LLVLLCRHGG EKVVTLLGRM PGLMGSLHSL VADGSPATCK KARSLISMIH RHYELTRPSS SPVPLPVPTP DAGDRFVRLV
701: L

Best Arabidopsis Sequence Match ( AT1G60190.1 )
(BLAST)

001: MIHTPTGSSR RILTFPAVNP CESISLTTLV DSLLQLAGEI LSFKPKHFST NKRSVKETLR HVQTLVIFFE ELRIQIRVGS IPAGRSVILS LSELHVIFQK
101: LKFLLDDCTR DGAKLYMLMN SGQVSAHFRD LTRSISTSLD TFPVRSVDLP GEVNELIYLV MRQTRKSEAR PDRDDKRAID SVYWFFNLFE NRINPNSDEI
201: LRVLDHIGVR KWRDCVKEID FLREEISVGK KSNIEIELLS NLMGFICYCR CVILRGIDVD DEEKDKEEDD LMMVRSLNVD DLRCPISLEI MSDPVVLESG
301: HTYDRSSITK WFASGNITCP KTGKTLVSTV LVDNFSVKQV IQSYSKQNGV VMGQKGKKKV DVAESLAAEE AGKLTAEFLA GELIKGDEEE MVKALVEIRI
401: LTKTSTFYRS CLVEAGVVES LMKILRSDDP RIQENAMAGI MNLSKDIAGK TRIVGEDGGG LRLIVEVLND GARRESRQYA AAALFYLSSL GDYSRLIGEI
501: SDAIPGLVRI VKSCDYGDSA KRNALIAIRS LLMNQPDNHW RILAAGIVPV LLDLVKSEEI SDGVTADSMA ILAKMAEYPD GMISVLRRGG LKLAVKILGS
601: SEVSPATKQH CVALLLNLCH NGGSDVVGSL AKNPSIMGSL YTASSNGELG GGKKASALIK MIHEFQERKT GPGEPVLERE RFVHAW

Arabidopsis Description

PUB19U-box domain-containing protein 19 [Source:UniProtKB/Swiss-Prot;Acc:O80742]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.