Factsheet for TraesCS7B01G473200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G536300.1	Wheat	cytosol	92.88	97.05
TraesCS7A01G549700.1	Wheat	cytosol	92.14	96.13
HORVU7Hr1G121810.1	Barley	cytosol	85.46	89.86
KXG20946	Sorghum	cytosol	73.44	76.98
Zm00001d014845_P001	Maize	cytosol	73.15	76.91
TraesCS7B01G186600.1	Wheat	cytosol	66.91	70.03
GSMUA_Achr4P04900_001	Banana	cytosol	48.07	61.36
GSMUA_Achr4P05030_001	Banana	cytosol	47.48	61.07
Os06t0726900-00	Rice	cytosol	33.23	58.95
VIT_03s0038g03660.t01	Wine grape	cytosol	52.52	55.23
KRH40395	Soybean	cytosol	51.48	54.65
KRH00831	Soybean	cytosol	50.89	54.02
PGSC0003DMT400025648	Potato	cytosol	50.89	52.85
Solyc04g082440.2.1	Tomato	cytosol	50.74	52.7
Solyc12g094610.1.1	Tomato	cytosol	40.95	51.4
PGSC0003DMT400075612	Potato	cytosol	48.37	50.54
Bra027977.1-P	Field mustard	cytosol	48.52	50.15
CDX95193	Canola	cytosol	48.66	50.08
CDY68037	Canola	cytosol	48.66	50.08
AT5G42340.1	Thale cress	cytosol	48.66	49.7
VIT_18s0001g14180.t01	Wine grape	cytosol	50.3	49.56
KRH33490	Soybean	cytosol	38.43	49.33
TraesCS3B01G443200.1	Wheat	cytosol, endoplasmic reticulum	15.88	42.13
TraesCS5B01G087500.1	Wheat	cytosol	35.61	35.19
TraesCS6B01G324000.1	Wheat	cytosol	32.79	34.37
TraesCS4B01G206900.1	Wheat	plastid	36.94	32.51
TraesCS2B01G294100.1	Wheat	nucleus	20.62	30.22
TraesCS6B01G222200.1	Wheat	cytosol	18.4	29.59
TraesCS2B01G213900.1	Wheat	cytosol	15.58	29.09
TraesCS3B01G422200.1	Wheat	cytosol	17.06	26.02
TraesCS1B01G310100.1	Wheat	plastid	24.93	24.93
TraesCS3B01G377600.1	Wheat	plastid	24.63	24.16
TraesCS3B01G591000.1	Wheat	cytosol	29.53	23.95
TraesCS2B01G499300.1	Wheat	plasma membrane	23.29	22.79
TraesCS3B01G443500.1	Wheat	cytosol	17.66	22.5
TraesCS5B01G197400.1	Wheat	cytosol, plasma membrane, plastid	23.29	22.4
TraesCS2B01G216300.1	Wheat	plastid	15.13	22.27

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF49	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS7B01G473200	EnsemblPlants:TraesCS7B01G473200.1	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	TIGR:cd16664	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7B:+:730022797..730025332

Molecular Weight (calculated)

75074.5 Da

IEP (calculated)

7.698

GRAVY (calculated)

-0.218

Length

674 amino acids

Sequence
(BLAST)

001: MLSSMFGTRP AGEPDPPEPE PEPSGRQLSD GDLLEELVAT VGAAQAFQEF RRSHRKECFN LLRWLQLVLP LIEELQDASP PRPLTDDAHR RLALLSRAFQ
101: AARRLLRCCH DGSKIFLVRH RPPIPSLSVK GLMGFLIRRW FSWSQSLEGE AVQGRFRAVY EKINQALDGM PYSDIGISDE VKEQVELINT QLKRSKKRTD
201: TQDMELAMDF MVVLQDKEDR SADRVILERL AKKLELQSLA DLRAETMAIK KLINERNGQQ PESTKQIIEI LNKLKEVAGI DEKNILGEVH IPKYLEKCPS
301: LMIPNDFLCP ISLEIMTDPV IIASGRTYER RSIQKWLYAG QRTCPKTQQP LAHLSLAPNF ALKNLILQWC EKNKVEMQTR VDEPPVEEEV SKEVLIPSLV
401: KDLSSPNLDV QRKAAKKIRT LSKESPEDRI LIVDSDGIAA LVGLLQYPDK KIQDNAVTSL LNLSIDEANK VLIAKGNAIP LIIEVLKNGN VEGQENSAAA
501: LFSLSMVDEN KVAIGALGGM PPLVDLLKNG TIRGKKDAST AIFNLLLNHQ NKLRAIEAGI VPVLLKILDN TKLGMVDECL SIFLLLGSNS TCRGTIGTES
601: FVETLVRIIK EGTPKNKECA LSVILELGSH NNALMVHALG FGLHEHLTEI AKNGTSRAQR KANSLIQLAR KCES

Best Arabidopsis Sequence Match ( AT1G23030.1 )
(BLAST)

001: MAGGIVSPAS LLDLIADIVE IPLNTGMFKK DCADLTRRVC LLTHLLEEIR DSTPIDSAAS SSSENDWWSD LVVGLQAAKR LLSTARFQAR DSSDGAAKRI
101: SFQFQCVTWK LEKALSNLPY DLYDISDEVG EQVELARSQL RRAMQRYGSL NSNKFSSALS EPMERDGFSN VIKIKAEEKL ESVSETLHFG EEEEKQSSPP
201: LRRSSSISLA YYLSKDADTD RLDKMVNKNT DESKKSDKLT IPVDFLCPVS LELMKDPVIV ATGQTYERAY IQRWIDCGNL TCPKTQQKLE NFTLTPNYVL
301: RSLISRWCAE HNIEQPAGYI NGRTKNSGDM SVIRALVQRL SSRSTEDRRN AVSEIRSLSK RSTDNRILIA EAGAIPVLVN LLTSEDVATQ ENAITCVLNL
401: SIYENNKELI MFAGAVTSIV QVLRAGTMEA RENAAATLFS LSLADENKII IGGSGAIPAL VDLLENGTPR GKKDAATALF NLCIYHGNKG RAVRAGIVTA
501: LVKMLSDSTR HRMVDEALTI LSVLANNQDA KSAIVKANTL PALIGILQTD QTRNRENAAA ILLSLCKRDT EKLITIGRLG AVVPLMDLSK NGTERGKRKA
601: ISLLELLRKA CQ

Arabidopsis Description

PUB11RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WCR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.