Factsheet for TraesCS5B01G087500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G093700.1	Wheat	cytosol	98.83	98.54
TraesCS5A01G078400.1	Wheat	cytosol	97.65	97.37
HORVU5Hr1G021270.1	Barley	cytosol	97.07	97.07
HORVU5Hr1G021280.1	Barley	cytosol	97.07	96.22
Os12t0570000-01	Rice	cytosol	66.28	87.43
Zm00001d030732_P001	Maize	cytosol	78.89	80.9
OQU79384	Sorghum	cytosol	77.86	79.73
Zm00001d041548_P002	Maize	cytosol	78.01	79.17
KRH29807	Soybean	cytosol	58.21	60.06
KRH24807	Soybean	cytosol	58.21	59.97
AT2G28830.1	Thale cress	endoplasmic reticulum	50.29	58.93
VIT_06s0004g04530.t01	Wine grape	cytosol	58.36	58.36
GSMUA_Achr6P34170_001	Banana	cytosol	56.74	58.28
Solyc11g066040.1.1	Tomato	cytosol	55.28	56.86
PGSC0003DMT400001049	Potato	cytosol	55.13	56.63
Solyc06g076040.2.1	Tomato	cytosol	54.25	55.98
PGSC0003DMT400078166	Potato	cytosol	54.25	55.98
AT3G46510.1	Thale cress	cytosol	53.52	55.3
Bra035665.1-P	Field mustard	cytosol	52.49	54.91
CDX77213	Canola	cytosol	51.76	54.9
CDY31736	Canola	cytosol	51.61	54.83
Bra033820.1-P	Field mustard	cytosol	52.49	54.41
CDX68379	Canola	cytosol	52.35	54.26
Bra018212.1-P	Field mustard	cytosol	51.61	54.07
CDX68380	Canola	cytosol	42.08	53.95
CDX86080	Canola	cytosol	51.47	53.51
CDX99112	Canola	cytosol	51.17	53.28
TraesCS4B01G206900.1	Wheat	plastid	57.33	51.04
KRG99865	Soybean	cytosol	41.79	46.19
TraesCS3B01G443200.1	Wheat	cytosol, endoplasmic reticulum	16.72	44.88
TraesCS6B01G324000.1	Wheat	cytosol	38.27	40.59
TraesCS7B01G186600.1	Wheat	cytosol	37.39	39.6
TraesCS7B01G473200.1	Wheat	cytosol	35.19	35.61
TraesCS6B01G222200.1	Wheat	cytosol	21.55	35.08
TraesCS2B01G213900.1	Wheat	cytosol	17.3	32.69
TraesCS2B01G294100.1	Wheat	nucleus	21.41	31.74
TraesCS3B01G422200.1	Wheat	cytosol	19.06	29.41
TraesCS1B01G310100.1	Wheat	plastid	27.27	27.6
TraesCS2B01G216300.1	Wheat	plastid	18.04	26.86
TraesCS3B01G377600.1	Wheat	plastid	26.98	26.78
TraesCS2B01G499300.1	Wheat	plasma membrane	26.39	26.12
TraesCS3B01G591000.1	Wheat	cytosol	30.79	25.27
TraesCS3B01G443500.1	Wheat	cytosol	18.91	24.39
TraesCS5B01G197400.1	Wheat	cytosol, plasma membrane, plastid	23.46	22.82

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF235	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS5B01G087500	EnsemblPlants:TraesCS5B01G087500.1	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	TIGR:cd16664	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5B:+:112180881..112189254

Molecular Weight (calculated)

74698.7 Da

IEP (calculated)

5.229

GRAVY (calculated)

-0.255

Length

682 amino acids

Sequence
(BLAST)

001: MAGDQEESER ESPAPAAERV AAAVETVAAP GEFRNAYRRQ LLALSRRIRL LGPFAEELRE RRRPPGEEEE RALATLADAL EKALELLKLG REGSRISLVF
101: NRDRVMNIFQ EVVAQLEQAL HDFPYNELDI SDEVREQVEL VHAQLKRAKE RVDMPDDEFY NDLISLYNKT YDPSAELAIL ERLSEKLHLM TITDLTQESL
201: ALHEMVASGG GQDPGEHIEK LSMLLKKIKD FVQTNNPEMG PPMASKIMDT SGDQKSVIVP DEFRCPISLE LMKDPVIVAT GQTYERSCIE KWLASGHHTC
301: PTTQQRMANT TLTANYVLRS LISQWCETNG IEAPKRSSQP SKPMPACSSS ERANIDALLS KLCSPDPEEQ RSAAAELRLL AKRNAHNRLC IAEAGAIPLL
401: LSLLSSSDLR TQEHAVTALL NLSIHEDNKA SIMSSGAVPS VVHVLKNGSM EARENAAATL FSLSVVDEYK VMIGGTGAIP ALVVLLSEGS QRGKKDAAAA
501: LFNLCIYQGN KGRAIRAGLV PLIMGLVTNP TGALMDEAMA ILSILSSHQE GKAAIGAAEP VPALVELLGS GSPRNRENAA AVMLHLCSGE QQLVHLARAH
601: ECGIMVPLRE LALNGTERGK RKAVQLLERM SRFVVQQQEE QESNSRLQAA VAQVLPQAPE QVQERDIPDQ LDSPASQYPT LL

Best Arabidopsis Sequence Match ( AT1G23030.1 )
(BLAST)

001: MAGGIVSPAS LLDLIADIVE IPLNTGMFKK DCADLTRRVC LLTHLLEEIR DSTPIDSAAS SSSENDWWSD LVVGLQAAKR LLSTARFQAR DSSDGAAKRI
101: SFQFQCVTWK LEKALSNLPY DLYDISDEVG EQVELARSQL RRAMQRYGSL NSNKFSSALS EPMERDGFSN VIKIKAEEKL ESVSETLHFG EEEEKQSSPP
201: LRRSSSISLA YYLSKDADTD RLDKMVNKNT DESKKSDKLT IPVDFLCPVS LELMKDPVIV ATGQTYERAY IQRWIDCGNL TCPKTQQKLE NFTLTPNYVL
301: RSLISRWCAE HNIEQPAGYI NGRTKNSGDM SVIRALVQRL SSRSTEDRRN AVSEIRSLSK RSTDNRILIA EAGAIPVLVN LLTSEDVATQ ENAITCVLNL
401: SIYENNKELI MFAGAVTSIV QVLRAGTMEA RENAAATLFS LSLADENKII IGGSGAIPAL VDLLENGTPR GKKDAATALF NLCIYHGNKG RAVRAGIVTA
501: LVKMLSDSTR HRMVDEALTI LSVLANNQDA KSAIVKANTL PALIGILQTD QTRNRENAAA ILLSLCKRDT EKLITIGRLG AVVPLMDLSK NGTERGKRKA
601: ISLLELLRKA CQ

Arabidopsis Description

PUB11RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WCR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.