CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030732_P001	Maize	cytosol	90.99	91.13
Zm00001d041548_P002	Maize	cytosol	90.54	89.73
Os12t0570000-01	Rice	cytosol	63.96	82.4
HORVU5Hr1G021270.1	Barley	cytosol	80.03	78.15
TraesCS5B01G087500.1	Wheat	cytosol	79.73	77.86
TraesCS5A01G078400.1	Wheat	cytosol	79.88	77.78
TraesCS5D01G093700.1	Wheat	cytosol	79.73	77.63
HORVU5Hr1G021280.1	Barley	cytosol	80.03	77.47
KRH29807	Soybean	cytosol	59.16	59.61
GSMUA_Achr6P34170_001	Banana	cytosol	59.31	59.49
KRH24807	Soybean	cytosol	59.01	59.37
VIT_06s0004g04530.t01	Wine grape	cytosol	60.06	58.65
AT2G28830.1	Thale cress	endoplasmic reticulum	50.6	57.9
Solyc11g066040.1.1	Tomato	cytosol	57.06	57.32
PGSC0003DMT400001049	Potato	cytosol	56.76	56.93
Solyc06g076040.2.1	Tomato	cytosol	54.95	55.37
PGSC0003DMT400078166	Potato	cytosol	54.95	55.37
AT3G46510.1	Thale cress	cytosol	54.5	55.0
Bra018212.1-P	Field mustard	cytosol	53.6	54.84
CDX77213	Canola	cytosol	52.85	54.74
CDY31736	Canola	cytosol	52.7	54.67
CDX68380	Canola	cytosol	43.54	54.51
CDX86080	Canola	cytosol	53.6	54.42
Bra033820.1-P	Field mustard	cytosol	53.75	54.41
CDX68379	Canola	cytosol	53.75	54.41
Bra035665.1-P	Field mustard	cytosol	53.15	54.29
CDX99112	Canola	cytosol	53.3	54.2
EER87680	Sorghum	cytosol	48.05	53.24
OQU92820	Sorghum	cytosol	59.46	52.87
KRG99865	Soybean	cytosol	41.74	45.06
EES07310	Sorghum	cytosol	38.89	40.6
EES15482	Sorghum	cytosol	35.59	36.86
KXG20946	Sorghum	cytosol	35.29	36.55
EES06804	Sorghum	cytosol	24.77	35.56
EER97464	Sorghum	cytosol	18.02	33.15
OQU78182	Sorghum	plastid	27.93	27.39
EER97453	Sorghum	plastid	19.22	27.35
EES04812	Sorghum	plastid	29.58	27.02
OQU80426	Sorghum	endoplasmic reticulum, plasma membrane	28.53	26.61
KXG33626	Sorghum	plastid	26.13	24.79
EES01872	Sorghum	cytosol	29.73	24.6
KXG35540	Sorghum	plasma membrane	25.53	23.74
EES14396	Sorghum	cytosol	32.43	21.45

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	UniProt:A0A1Z5R6I7	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005829	GO:GO:0006464	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008219	GO:GO:0009628	GO:GO:0009791	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0031348	GO:GO:0043069	GO:GO:0048586	InterPro:IPR000225	InterPro:IPR003613
InterPro:IPR011989	InterPro:IPR013083	EnsemblPlants:OQU79384	ProteinID:OQU79384	ProteinID:OQU79384.1	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF235	SMART:SM00185
SMART:SM00504	EnsemblPlantsGene:SORBI_3008G136200	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000B425C2B	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:56500309..56508837

Molecular Weight (calculated)

72808.5 Da

IEP (calculated)

5.090

GRAVY (calculated)

-0.201

Length

666 amino acids

Sequence
(BLAST)

001: MAGEAAERVA AAVEAVGSGG WEFRNAYRRQ LLALSRRIRL LGPFAEELRE ARRGRPAEEE EEQERALAPL ADALEEALDL LQLGRDGSRI FLVLDRNKVM
101: KKFHESIAQL EQALCDFPYD KLDISDEVTE QVELVHVQLK RAKERVDMPD DEFYHELLSL YNKSHDPSAE LDILGRLSEK LHLTTITDLT QESLALHEMV
201: ASGGGNDPGE HIEKMSMLLK KIKDFVQTQN PEMGPPVTTK VMDSNGEPRP INIPDEFRCP ISLELMKDPV IVATGQTYER AFIEKWIASG HHTCPNTQQR
301: MPNTTLTPNY VLRSLIAQWC EANGIDPPKR PTEADKPTSS CSPSERAIID ALLSKLCSAD PEEQRSAAAE LRLLAKRNAN NRICIAEAGA IPLLLSLLSS
401: SDLQTQEHAV TALLNLSIHE DNKSSIILSG AVPGIVHVLK NGSMQARENA AATLFSLSVV DEYKVTIGGT GAIPALVVLL SEGSPRGMKD AAAALFNLCI
501: YQGNKGRAIR AGLVPLIMGL VTNPTGALLD EAMAILSILS SHPEGKAAIG AAEPVPVLVE MIGSGSPRNR ENAAAVMLHL SVHNGHLARA QECGIMVPLR
601: ELALNGTDRG KRKAVQLLER MSRFLVMQHE DTVSQQLDEI ERQFAALGPN VTEADLEQLG EQLGYL

Best Arabidopsis Sequence Match ( AT3G46510.1 )
(BLAST)

001: MEEEKASAAQ SLIDVVNEIA AISDYRITVK KLCYNLARRL KLLVPMFEEI RESNEPISED TLKTLMNLKE AMCSAKDYLK FCSQGSKIYL VMEREQVTSK
101: LMEVSVKLEQ SLSQIPYEEL DISDEVREQV ELVLSQFRRA KGRVDVSDDE LYEDLQSLCN KSSDVDAYQP VLERVAKKLH LMEIPDLAQE SVALHEMVAS
201: SGGDVGENIE EMAMVLKMIK DFVQTEDDNG EEQKVGVNSR SNGQTSTAAS QKIPVIPDDF RCPISLEMMR DPVIVSSGQT YERTCIEKWI EGGHSTCPKT
301: QQALTSTTLT PNYVLRSLIA QWCEANDIEP PKPPSSLRPR KVSSFSSPAE ANKIEDLMWR LAYGNPEDQR SAAGEIRLLA KRNADNRVAI AEAGAIPLLV
401: GLLSTPDSRI QEHSVTALLN LSICENNKGA IVSAGAIPGI VQVLKKGSME ARENAAATLF SLSVIDENKV TIGALGAIPP LVVLLNEGTQ RGKKDAATAL
501: FNLCIYQGNK GKAIRAGVIP TLTRLLTEPG SGMVDEALAI LAILSSHPEG KAIIGSSDAV PSLVEFIRTG SPRNRENAAA VLVHLCSGDP QHLVEAQKLG
601: LMGPLIDLAG NGTDRGKRKA AQLLERISRL AEQQKETAVS QPEEEAEPTH PESTTEAADT

Arabidopsis Description

PUB13U-box domain-containing protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.