CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038471_P001	Maize	cytosol, plasma membrane, plastid	92.93	94.18
TraesCS1D01G299400.1	Wheat	cytosol, plastid	79.53	80.96
TraesCS1A01G300000.1	Wheat	cytosol	79.53	80.84
Os05t0476700-01	Rice	plastid	80.27	80.5
TraesCS1B01G310100.1	Wheat	plastid	79.53	80.12
HORVU1Hr1G069990.1	Barley	plastid	80.27	79.91
KXG33626	Sorghum	plastid	71.28	68.95
GSMUA_Achr8P25140_001	Banana	plastid	36.23	58.57
GSMUA_Achr7P22130_001	Banana	cytosol	49.19	52.76
GSMUA_Achr4P00200_001	Banana	plastid	53.31	51.42
Bra001998.1-P	Field mustard	cytosol	39.32	44.72
AT5G01830.1	Thale cress	plastid	43.59	43.92
Solyc09g018230.1.1	Tomato	plastid	43.59	43.02
CDX71307	Canola	cytosol	42.56	42.94
PGSC0003DMT400071349	Potato	plastid	43.74	42.92
Bra019022.1-P	Field mustard	cytosol	42.56	42.88
CDY31406	Canola	cytosol	42.42	42.73
VIT_08s0058g01100.t01	Wine grape	plastid	42.56	42.69
KRH76105	Soybean	cytosol, plastid	42.56	41.17
KRH65448	Soybean	plastid	29.31	40.78
EES04812	Sorghum	plastid	36.52	34.02
EER87680	Sorghum	cytosol	27.1	30.62
EES06804	Sorghum	cytosol	20.91	30.6
EER97464	Sorghum	cytosol	15.02	28.18
OQU79384	Sorghum	cytosol	27.39	27.93
EES07310	Sorghum	cytosol	26.07	27.74
EES15482	Sorghum	cytosol	25.63	27.06
OQU80426	Sorghum	endoplasmic reticulum, plasma membrane	27.98	26.61
KXG20946	Sorghum	cytosol	24.59	25.97
KXG35540	Sorghum	plasma membrane	27.25	25.84
OQU92820	Sorghum	cytosol	28.28	25.63
EER97453	Sorghum	plastid	16.94	24.57
EES01872	Sorghum	cytosol	22.53	19.01
EES14396	Sorghum	cytosol	25.63	17.28

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1Z5R339	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EnsemblPlants:OQU78182
ProteinID:OQU78182	ProteinID:OQU78182.1	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698
PANTHER:PTHR23315	PANTHER:PTHR23315:SF147	SMART:SM00504	EnsemblPlantsGene:SORBI_3009G173300	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI000B8BAF8F	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:+:52836152..52838191

Molecular Weight (calculated)

71544.0 Da

IEP (calculated)

6.933

GRAVY (calculated)

0.062

Length

679 amino acids

Sequence
(BLAST)

001: MASGATSDAW PSSPYSSSAP DGEVLRSLHR LARDLSAAEA PAPFLRAVFA AVARRARLLA AVFDDLLLCG AAAGPLLLLP RSASLCLREL LLVLQRFKAL
101: VADCAARSRT RLLLQSDEVA ARARELQHDL ATLLDLLPVA DLGLADDVSD LLALASRQCR RAVAAPELEL KAGVLALIQE VEREIVPGRE RLEGVLEDVG
201: INDPASCSDE IETLEREIGD RVAERWTSSM IALVGLLRYA KCVLFSAATP RPVDSNKVDL DDGDGDDGAE PPSPPLDFRC PISLELMADP VVASSGQTYD
301: RDSITRWFGS GKSTCPKTGQ VLPNLELVPN KALKNLISRW CRENGIPMES SESGKSEPAP VVVGANKAAQ KAARMTASFL VKKLSASFSP EATKRVVQEI
401: RQLAKSGSDN RAFIGEAGAA GLLVPLLRSE DSALQLNAVT ALLNLSILEA NKKRIMHAEG AVDALCHVMC SGATWRAKEN AAATVLSLAA VHAYRRRLGR
501: NPRVVDSVVQ LARTGPASTK KDALAALLCL SAERENVPRI VEAGAAEAAL SAIGDAEAAA AVLASLAKRG GAEAIVALDG AVARLVAEMR RGTEWSRECA
601: AAALVLLCRR AGAAAASQVM AVPGVEWAIW ELLGTGTERA RRKAASLGRA CRRWAAAANA EQGTECPTSG DASGLTVAS

Best Arabidopsis Sequence Match ( AT5G01830.1 )
(BLAST)

001: MAVTLDSPSP ARKRRPLVVG SFESPKLSSD TKLTRSLFLA SHEISSMQPL PFILRRNSLS LIRKVKILAS VFDELLLPRS QLVVYSQSAH LCFEEMQIVM
101: QRIKSLIDDC SRVSKLWLLL QIDIVAFNFH ELVTDLSTVL DILPLHDFDL SDDAQDLISL LTKQCSDSVQ FVDARDVALR RKVTDTIAGI KHQISPDHST
201: LIKIFNDLGL SDSASLTDEI QRLEDEIQDQ IDDRSKSAAA SLIGLVRYSK CVLYGPSTPA PDFRRHQSLS DANIPADFRC PITLELMRDP VVVATGQTYD
301: RESIDLWIQS GHNTCPKTGQ VLKHTSLVPN RALKNLIVLW CRDQKIPFEL YGDGGGEPAP CKEAVEFTKM MVSFLIEKLS VADSNGVVFE LRALAKSDTV
401: ARACIAEAGA IPKLVRYLAT ECPSLQINAV TTILNLSILE QNKTRIMETD GALNGVIEVL RSGATWEAKA NAAATLFSLA GVSAYRRRLG RKARVVSGLV
501: DLAKQGPTSS KRDALVAILN LVAERENVGR FVEAGVMGAA GDAFQELPEE AVAVVEAVVR RGGLMAVSAA FSLIRLLGEV MREGADTTRE SAAATLVTMC
601: RKGGSELVAE MAAIPGIERV IWEMIGAGTA RGGRKAASLM RYLRRWAAGD THNTAAETQS IVVPTPSRIF SPVL

Arabidopsis Description

PUB16RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178UNI7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.