Factsheet for HORVU1Hr1G069990.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G310100.1	Wheat	plastid	93.99	95.1
TraesCS1A01G300000.1	Wheat	cytosol	92.96	94.91
TraesCS1D01G299400.1	Wheat	cytosol, plastid	92.82	94.9
Os05t0476700-01	Rice	plastid	82.11	82.72
OQU78182	Sorghum	plastid	79.91	80.27
Zm00001d038471_P001	Maize	cytosol, plasma membrane, plastid	78.74	80.15
HORVU3Hr1G081300.1	Barley	plastid	74.63	73.98
GSMUA_Achr8P25140_001	Banana	plastid	34.46	55.95
GSMUA_Achr7P22130_001	Banana	cytosol	47.95	51.66
GSMUA_Achr4P00200_001	Banana	plastid	50.88	49.29
Bra001998.1-P	Field mustard	cytosol	38.71	44.22
AT5G01830.1	Thale cress	plastid	42.96	43.47
PGSC0003DMT400071349	Potato	plastid	43.99	43.35
Solyc09g018230.1.1	Tomato	plastid	43.7	43.31
VIT_08s0058g01100.t01	Wine grape	plastid	42.82	43.13
CDX71307	Canola	cytosol	42.08	42.64
Bra019022.1-P	Field mustard	cytosol	42.08	42.58
CDY31406	Canola	cytosol	41.94	42.43
KRH76105	Soybean	cytosol, plastid	42.08	40.88
KRH65448	Soybean	plastid	28.89	40.37
HORVU7Hr1G038870.1	Barley	plastid	13.05	31.01
HORVU7Hr1G000780.1	Barley	cytosol	25.07	28.98
HORVU6Hr1G041430.8	Barley	mitochondrion	34.9	28.88
HORVU5Hr1G021270.1	Barley	cytosol	27.57	27.57
HORVU2Hr1G067610.6	Barley	cytosol	19.06	27.43
HORVU5Hr1G021280.1	Barley	cytosol	27.57	27.33
HORVU7Hr1G121810.1	Barley	cytosol	24.63	26.21
HORVU4Hr1G059610.2	Barley	cytosol	29.47	26.04
HORVU5Hr1G059280.1	Barley	cytosol, plasma membrane	26.1	25.39
HORVU7Hr1G061800.2	Barley	cytosol	23.75	25.16
HORVU2Hr1G036080.15	Barley	plastid	16.86	25.11
HORVU3Hr1G081380.1	Barley	cytosol	15.1	23.3
HORVU6Hr1G073280.1	Barley	cytosol	26.1	22.17
HORVU3Hr1G113910.3	Barley	cytosol	24.49	19.93

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	EMBL:AK362567	EMBL:AK363450	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	ncoils:Coil	UniProt:F2DFA0	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:HORVU1Hr1G069990	EnsemblPlants:HORVU1Hr1G069990.1
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF147	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0002005F92	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F2DFA0]

Coordinates

chrchr1H:-:487882055..487884794

Molecular Weight (calculated)

72234.1 Da

IEP (calculated)

8.162

GRAVY (calculated)

0.059

Length

682 amino acids

Sequence
(BLAST)

001: MASAKNAAPE PSAAASSSSS YSSSAPDVEI LRSLRRLARD LAAADPPAPF LRAVFASVSR RARLLVAVFD DLLLLGANGR MPRSASLCLR EVLLVLQRFK
101: AVVADCSARS RMRLLLQSDE VASRVRELQH DLATLLDILP VAELGLADDV ADLLTLASRQ CRRRAPGAAA EQELKASVLA LIQEVEREIV PERERLEAIL
201: EEVAINDPAS CSQEIEILER EIGDRLAERW TSAMIALVGL LRYAKCVLFS AATPRPLDSK VDADDDGAEP ASPPPDFRCP ISLDLMRDPV VSSSGQTYDR
301: ESITRWFGAG KSTCPKTGQV LTNLELVPNK ALKNLISRWC RENGVAMEGC EPGKPEPAPQ VTANKAAVEA ARMTASFLVK KLSASFSPGS DNRVVHEIRL
401: LAKSGSESRA FIGEAGAVPL LVPLLNSEDA ALQLNAVTAL LNLSILDANK KRIMHAEGAV AALCNVMGSG ATWRAKENAA ATVLSLSAVH TYRRRLGRNP
501: VVAEKVVLLV RTGPPSTKKD ALAALLCLSA ERENVGKLVG AGAAEAALSA IGEEEIAAAV LASLAKRGGA EAIVNIDGAV AKLVAEMRRG TEWSRECAAA
601: ALVLLCRRAG AAAVSQVLAI NGVEWAIWEL MGSGSERARR KAASLGRSCR RWAAANAAQN AECPTTTATT TTVVSPPTVA AS

Best Arabidopsis Sequence Match ( AT5G01830.1 )
(BLAST)

001: MAVTLDSPSP ARKRRPLVVG SFESPKLSSD TKLTRSLFLA SHEISSMQPL PFILRRNSLS LIRKVKILAS VFDELLLPRS QLVVYSQSAH LCFEEMQIVM
101: QRIKSLIDDC SRVSKLWLLL QIDIVAFNFH ELVTDLSTVL DILPLHDFDL SDDAQDLISL LTKQCSDSVQ FVDARDVALR RKVTDTIAGI KHQISPDHST
201: LIKIFNDLGL SDSASLTDEI QRLEDEIQDQ IDDRSKSAAA SLIGLVRYSK CVLYGPSTPA PDFRRHQSLS DANIPADFRC PITLELMRDP VVVATGQTYD
301: RESIDLWIQS GHNTCPKTGQ VLKHTSLVPN RALKNLIVLW CRDQKIPFEL YGDGGGEPAP CKEAVEFTKM MVSFLIEKLS VADSNGVVFE LRALAKSDTV
401: ARACIAEAGA IPKLVRYLAT ECPSLQINAV TTILNLSILE QNKTRIMETD GALNGVIEVL RSGATWEAKA NAAATLFSLA GVSAYRRRLG RKARVVSGLV
501: DLAKQGPTSS KRDALVAILN LVAERENVGR FVEAGVMGAA GDAFQELPEE AVAVVEAVVR RGGLMAVSAA FSLIRLLGEV MREGADTTRE SAAATLVTMC
601: RKGGSELVAE MAAIPGIERV IWEMIGAGTA RGGRKAASLM RYLRRWAAGD THNTAAETQS IVVPTPSRIF SPVL

Arabidopsis Description

PUB16RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178UNI7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.