Factsheet for HORVU6Hr1G073280.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G047110.10

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71020.1	HORVU1Hr1G047110.10	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G324000.1	Wheat	cytosol	77.21	96.42
TraesCS6A01G293600.1	Wheat	cytosol	76.84	96.26
TraesCS6D01G274500.1	Wheat	cytosol	76.84	96.26
EES07310	Sorghum	cytosol	64.76	81.5
Os02t0732200-01	Rice	cytosol	64.38	81.16
Zm00001d000381_P001	Maize	cytosol	63.01	79.31
KRG89279	Soybean	cytosol	42.34	52.23
KRH50347	Soybean	nucleus	42.34	51.99
Bra012355.1-P	Field mustard	plasma membrane	37.98	51.87
CDY25764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	37.73	51.53
CDY21412	Canola	cytosol, endoplasmic reticulum	38.48	50.82
CDY12497	Canola	cytosol	37.73	50.75
CDY04746	Canola	cytosol, endoplasmic reticulum	38.48	50.74
Bra024559.1-P	Field mustard	cytosol, plasma membrane	38.48	50.74
PGSC0003DMT400015349	Potato	cytosol	40.85	50.7
VIT_01s0011g04770.t01	Wine grape	cytosol	40.1	50.39
Bra016165.1-P	Field mustard	cytosol, plasma membrane	38.48	50.16
Solyc04g007640.2.1	Tomato	cytosol	40.35	50.08
AT1G71020.1	Thale cress	cytosol	39.1	50.0
CDX96295	Canola	cytosol, plasma membrane	38.36	50.0
GSMUA_Achr9P15600_001	Banana	cytosol	41.59	49.41
AT1G23030.1	Thale cress	cytosol	37.36	49.02
CDX72769	Canola	cytosol	37.36	49.02
PGSC0003DMT400078473	Potato	cytosol	39.35	48.62
Solyc05g008230.2.1	Tomato	cytosol	38.85	48.0
CDY04747	Canola	cytosol, golgi	24.91	45.35
HORVU7Hr1G000780.1	Barley	cytosol	32.01	43.56
HORVU5Hr1G021270.1	Barley	cytosol	32.38	38.12
HORVU5Hr1G021280.1	Barley	cytosol	32.38	37.79
HORVU7Hr1G038870.1	Barley	plastid	13.45	37.63
HORVU7Hr1G121810.1	Barley	cytosol	27.65	34.63
HORVU7Hr1G061800.2	Barley	cytosol	27.77	34.63
HORVU4Hr1G059610.2	Barley	cytosol	32.75	34.07
HORVU2Hr1G067610.6	Barley	cytosol	18.8	31.86
HORVU2Hr1G036080.15	Barley	plastid	16.94	29.69
HORVU3Hr1G081380.1	Barley	cytosol	15.69	28.51
HORVU1Hr1G069990.1	Barley	plastid	22.17	26.1
HORVU3Hr1G081300.1	Barley	plastid	21.79	25.44
HORVU6Hr1G041430.8	Barley	mitochondrion	24.53	23.91
HORVU5Hr1G059280.1	Barley	cytosol, plasma membrane	20.17	23.11
HORVU3Hr1G113910.3	Barley	cytosol	23.91	22.91

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	UniProt:A0A287UNP3	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	EnsemblPlantsGene:HORVU6Hr1G073280	EnsemblPlants:HORVU6Hr1G073280.1	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF52	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000B476ABE
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A287UNP3]

Coordinates

chrchr6H:+:507756329..507760631

Molecular Weight (calculated)

85846.9 Da

IEP (calculated)

7.181

GRAVY (calculated)

-0.181

Length

803 amino acids

Sequence
(BLAST)

001: RGQRGEAGTR DPEPVAPRGV QPGGHRFPGI SLLRSAAPRP GISPHANGSP VASHPTPSSP PPLSPPHGLR LTGGRDGIPP SHSQLAAANL SPAPHFINPQ
101: PILILITPFL PRAEPPRTTT TTAPTLLRDV DIGGWHAPSP LRFPAAPPSR PPRGVLTRGG AMAATAGAAA EIVREIAAVG AADLAAAVEP LRADCLRLAR
201: KVSLLTHLVA EVAEASSGED GASEPEATAW VADLLLALQA ARRFVALGRG PALHTGAADQ DVNDKNIAVQ FKYVTWQLQA ALTNLPHNCF QISDEVQEEV
301: DLVRGQLKRE MEKKGALDLN IFSKIHDILA HHVDNVGSQS EEPNSQPETL PLENVSSDHL ELQHVALLIS EISGISKSDI KKITSELIEE LENTTVAVSA
401: KPTNGDGQTS DEAKDSPDKV KKSDTVAMPE DFRCPISLDL MRDPVIVSTG QTYERAFIQR WIDGGNRTCP KTQQKLQNLT LTPNYVLRSL ILQWCEEKGI
501: EPPTRSKYEG SSVEVGEDRL AIEALVRNLS CSSLDERKSA AAEIRSLAKK STDNRMLLAE SGAIPALVKL LSSKDPKTQE HAVTSLLNLS IYDQNKELIV
601: VGGAIVPIIQ VLRTGSMEAR ENAAAAIFSL SLIDDNKIMI GSTPGAIEAL VELLKSGSSR GRKDAATALF NLCIYQANKV RAVRAGILSP LVQMLQDSSS
701: TGATDEALTI LSVLVSHHEC KTAIAKAHTI PFLIDLLRSS QARNKENAAA ILLALCKKDA QNLACIGRLG AQIPLTELSK TGSDRAKRKA TSLLEHLSKL
801: QVL

Best Arabidopsis Sequence Match ( AT1G23030.1 )
(BLAST)

001: MAGGIVSPAS LLDLIADIVE IPLNTGMFKK DCADLTRRVC LLTHLLEEIR DSTPIDSAAS SSSENDWWSD LVVGLQAAKR LLSTARFQAR DSSDGAAKRI
101: SFQFQCVTWK LEKALSNLPY DLYDISDEVG EQVELARSQL RRAMQRYGSL NSNKFSSALS EPMERDGFSN VIKIKAEEKL ESVSETLHFG EEEEKQSSPP
201: LRRSSSISLA YYLSKDADTD RLDKMVNKNT DESKKSDKLT IPVDFLCPVS LELMKDPVIV ATGQTYERAY IQRWIDCGNL TCPKTQQKLE NFTLTPNYVL
301: RSLISRWCAE HNIEQPAGYI NGRTKNSGDM SVIRALVQRL SSRSTEDRRN AVSEIRSLSK RSTDNRILIA EAGAIPVLVN LLTSEDVATQ ENAITCVLNL
401: SIYENNKELI MFAGAVTSIV QVLRAGTMEA RENAAATLFS LSLADENKII IGGSGAIPAL VDLLENGTPR GKKDAATALF NLCIYHGNKG RAVRAGIVTA
501: LVKMLSDSTR HRMVDEALTI LSVLANNQDA KSAIVKANTL PALIGILQTD QTRNRENAAA ILLSLCKRDT EKLITIGRLG AVVPLMDLSK NGTERGKRKA
601: ISLLELLRKA CQ

Arabidopsis Description

PUB11RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WCR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.