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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 2
  • plastid 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2A01G276400.1 Wheat nucleus 93.67 96.52
TraesCS2B01G294100.1 Wheat nucleus 93.46 96.3
TraesCS2D01G275400.1 Wheat nucleus 92.41 95.22
Os04t0348400-01 Rice cytosol 72.57 74.95
GSMUA_Achr6P06560_001 Banana cytosol 44.09 56.03
GSMUA_Achr9P01670_001 Banana cytosol 52.32 53.22
GSMUA_Achr10P... Banana cytosol 41.56 52.67
AT3G07360.1 Thale cress cytosol 44.51 45.87
KRH68828 Soybean cytosol 40.93 45.12
VIT_00s0524g00030.t01 Wine grape cytosol 42.41 44.77
VIT_04s0043g00840.t01 Wine grape cytosol 42.83 44.62
KRG97080 Soybean cytosol, nucleus 41.14 44.32
CDX74050 Canola cytosol 42.41 44.08
Bra001247.1-P Field mustard cytosol 42.19 43.86
CDY28059 Canola cytosol 42.62 43.72
CDY71737 Canola cytosol 42.62 43.72
Bra040374.1-P Field mustard cytosol 41.56 43.68
CDY08002 Canola cytosol 41.56 43.3
Bra029642.1-P Field mustard cytosol 42.19 43.29
KRH46608 Soybean cytosol 41.56 42.73
KRG99581 Soybean cytosol 41.56 42.73
PGSC0003DMT400016998 Potato cytosol 39.66 41.87
Solyc09g056450.2.1 Tomato cytosol 39.45 41.65
Solyc04g050780.1.1 Tomato cytosol 36.71 40.37
PGSC0003DMT400011486 Potato cytosol 30.38 40.34
KRG92593 Soybean cytosol 37.13 39.73
PGSC0003DMT400039084 Potato cytosol 35.87 38.37
Solyc04g050770.1.1 Tomato cytosol 35.87 38.37
CDY68352 Canola cytosol 31.22 32.46
CDY38506 Canola cytosol 31.01 32.24
AT5G18320.1 Thale cress cytosol 30.38 31.44
AT5G18340.1 Thale cress nucleus 27.85 28.95
AT5G18330.1 Thale cress cytosol 27.0 28.76
Bra006451.1-P Field mustard cytosol 27.64 28.05
CDX70810 Canola cytosol 27.22 27.33
HORVU7Hr1G038870.1 Barley plastid 15.4 25.44
CDY51235 Canola extracellular, golgi 27.64 25.24
HORVU7Hr1G000780.1 Barley cytosol 31.01 24.92
HORVU7Hr1G061800.2 Barley cytosol 29.54 21.74
HORVU5Hr1G021270.1 Barley cytosol 30.8 21.41
HORVU5Hr1G021280.1 Barley cytosol 30.8 21.22
HORVU7Hr1G121810.1 Barley cytosol 28.06 20.75
HORVU3Hr1G081380.1 Barley cytosol 18.99 20.36
HORVU4Hr1G059610.2 Barley cytosol 32.7 20.08
HORVU2Hr1G036080.15 Barley plastid 18.99 19.65
HORVU1Hr1G069990.1 Barley plastid 27.43 19.06
HORVU6Hr1G073280.1 Barley cytosol 31.86 18.8
HORVU3Hr1G081300.1 Barley plastid 26.16 18.02
HORVU6Hr1G041430.8 Barley mitochondrion 28.06 16.14
HORVU3Hr1G113910.3 Barley cytosol 28.48 16.11
HORVU5Hr1G059280.1 Barley cytosol, plasma membrane 20.89 14.12
Bra002153.1-P Field mustard cytosol 31.43 10.91
CDX70805 Canola cytosol 27.43 8.44
CDY51234 Canola cytosol 27.85 7.97
Bra006452.1-P Field mustard cytosol 27.85 7.95
Protein Annotations
Gene3D:1.25.10.10MapMan:19.2.2.1.5.2.1Gene3D:3.30.40.10UniProt:A0A287IAD4InterPro:ARM-likeInterPro:ARM-type_fold
InterPro:ArmadilloGO:GO:0003674GO:GO:0003824GO:GO:0004842GO:GO:0005102GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005886
GO:GO:0006464GO:GO:0008150GO:GO:0008152GO:GO:0009719GO:GO:0009987GO:GO:0016020
GO:GO:0016567GO:GO:0016740GO:GO:0019538GO:GO:0070696GO:GO:0071215EnsemblPlantsGene:HORVU2Hr1G067610
EnsemblPlants:HORVU2Hr1G067610.6InterPro:IPR000225InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083PFAM:PF00514
PFAM:PF04564PFscan:PS51698PANTHER:PTHR23315PANTHER:PTHR23315:SF121SMART:SM00504SUPFAM:SSF48371
SUPFAM:SSF57850UniParc:UPI000B475E79InterPro:Ubox_domainInterPro:Znf_RING/FYVE/PHDSEG:seg:
Description
RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A287IAD4]
Coordinates
chrchr2H:+:473427694..473431782
Molecular Weight (calculated)
51973.1 Da
IEP (calculated)
5.905
GRAVY (calculated)
-0.248
Length
474 amino acids
Sequence
(BLAST)
001: PSGSAHASHA FPPEMAKPPP AEEETAALRR RLRRLVATIT AGGAGAEAFD EAATALSELR EAHVGGSRKG ARGEETRSAK EAESVPAQFL CPISSKIMRD
101: PVVVESGQTY DRRFIADWFS AGNQMCPQTQ QVLLNTTLIP NLLIRSLIAE WCTENGFALS PIENQEEDPI CNSEQRTFDE IFNKITSSSN STERKQAIKG
201: LRLLTKRSSE FRAVLEERPD SISQMTFARF SNPGLQNDPQ VVEDMVTIIL NFSLHDSNKK IIGDDPEAIP FLIWALKSGD MGSRSNSAAA IFTLSALDSN
301: KEKIGELGAI EPLIDLLEHG SIIAKKDAAS AIFNLCMLHE NRSIATRSGI VDVAIRAIGD QSLVEEFLAI LALLSSNYDM VELMIEFGGA SCMLQAMRES
401: ECKRSKENAA VILFSICMYN RTKLKEIEAD ENANGSLASL AQNGTPRARR KATAILEMMK KTKTIHMHNR HSSC
Best Arabidopsis Sequence Match ( AT3G07360.1 )
(BLAST)
001: MAKTGVFDSD PTAIAKAKEL KREMKKLLIK IDDEDDLGVQ TIDQLQDALS ALREATMRKM AKSSSLEMLE TVSCPEEFRC PLSNELMRDP VVLASGQTYD
101: KLFIQKWLSS GNRTCPKTQQ VLPHTALTPN LLIREMISKW CKKNGLETKS QYHPNLVNED ETVTRSDREI FNSLLCKVSS SNLQDQKSAA KELRLLTRKG
201: TEFRALFGES PDEITRLVNP LLHGSNPDEK LQEDVVTTLL NISIHDDSNK KLVCENPNVI PLLIDALRRG TVATRSNAAA AIFTLSALDS NKVLIGKSGI
301: LKPLIDLLEE GNPLAIKDVA AAIFTLCIAH ENRSRAVRDG AVRVLGKKIS NGLYVDELLA ILAMLVTHWK AVEELGELGG VSWLLKITRE SECKRNKENA
401: IVILHTICFS DRTKWKEIKE EENAHGTITK LSREGTSRAQ RKANGILDRL RKAMNLTHTA
Arabidopsis Description
PUB9RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VJC7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.