Factsheet for VIT_00s0524g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016998	Potato	cytosol	69.04	69.04
KRH46608	Soybean	cytosol	70.82	68.98
VIT_04s0043g00840.t01	Wine grape	cytosol	69.71	68.79
KRG99581	Soybean	cytosol	70.16	68.33
Solyc09g056450.2.1	Tomato	cytosol	68.15	68.15
Bra040374.1-P	Field mustard	cytosol	61.25	60.98
AT3G07360.1	Thale cress	cytosol	61.92	60.43
CDY28059	Canola	cytosol	61.47	59.74
CDY71737	Canola	cytosol	61.25	59.52
CDY08002	Canola	cytosol	60.13	59.34
Bra029642.1-P	Field mustard	cytosol	61.02	59.31
Bra001247.1-P	Field mustard	cytosol	60.13	59.21
CDX74050	Canola	cytosol	59.91	58.99
GSMUA_Achr6P06560_001	Banana	cytosol	45.66	54.96
GSMUA_Achr10P...	Banana	cytosol	44.77	53.74
GSMUA_Achr9P01670_001	Banana	cytosol	54.79	52.79
Os02t0488600-01	Rice	cytosol, nucleus	46.1	48.94
EES06804	Sorghum	cytosol	48.78	47.2
Zm00001d016501_P001	Maize	cytosol	47.44	45.81
TraesCS2A01G276400.1	Wheat	nucleus	44.1	43.04
TraesCS2B01G294100.1	Wheat	nucleus	44.1	43.04
Os04t0348400-01	Rice	cytosol	43.88	42.92
TraesCS2D01G275400.1	Wheat	nucleus	43.88	42.83
HORVU2Hr1G067610.6	Barley	cytosol	44.77	42.41
CDY68352	Canola	cytosol	39.64	39.04
AT5G18320.1	Thale cress	cytosol	39.64	38.86
CDY38506	Canola	cytosol	38.08	37.5
AT5G18330.1	Thale cress	cytosol	34.08	34.38
AT5G18340.1	Thale cress	nucleus	32.96	32.46
CDX70810	Canola	cytosol	33.63	31.99
Bra006451.1-P	Field mustard	cytosol	32.96	31.69
VIT_13s0019g04710.t01	Wine grape	cytosol	40.53	28.98
CDY51235	Canola	extracellular, golgi	32.96	28.52
VIT_01s0011g04770.t01	Wine grape	cytosol	37.64	26.45
VIT_06s0004g04530.t01	Wine grape	cytosol	38.98	25.66
VIT_18s0001g09130.t01	Wine grape	cytosol	21.83	25.26
VIT_00s2269g00010.t01	Wine grape	plastid	23.83	23.67
VIT_03s0038g03660.t01	Wine grape	cytosol	31.85	22.31
VIT_13s0067g01460.t01	Wine grape	cytosol	33.85	22.09
VIT_07s0005g03520.t01	Wine grape	cytosol	37.42	21.35
VIT_18s0001g14180.t01	Wine grape	cytosol	32.29	21.2
VIT_10s0003g01730.t01	Wine grape	mitochondrion	32.52	20.11
VIT_08s0058g01100.t01	Wine grape	plastid	30.29	20.09
VIT_17s0000g08080.t01	Wine grape	cytosol, mitochondrion	29.4	19.44
VIT_07s0129g00590.t01	Wine grape	cytosol	35.86	18.99
VIT_01s0026g00190.t01	Wine grape	cytosol	27.39	18.01
Bra002153.1-P	Field mustard	cytosol	38.98	12.81
CDX70805	Canola	cytosol	33.85	9.86
CDY51234	Canola	cytosol	34.08	9.23
Bra006452.1-P	Field mustard	cytosol	34.08	9.21

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100264137	wikigene:100264137	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	ProteinID:CBI23501	ProteinID:CBI23501.3	ProteinID:CCB62989	ProteinID:CCB62989.1
UniProt:D7SZ16	EMBL:FN595285	EMBL:FN596985	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
EntrezGene:LOC100264137	wikigene:LOC100264137	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698
PANTHER:PTHR23315	PANTHER:PTHR23315:SF227	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI00015CE5EA	InterPro:Ubox_domain	ArrayExpress:VIT_00s0524g00030	EnsemblPlantsGene:VIT_00s0524g00030	EnsemblPlants:VIT_00s0524g00030.t01	unigene:Vvi.1449
RefSeq:XP_002263607	RefSeq:XP_002263607.1	InterPro:Znf_RING/FYVE/PHD	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:D7SZ16]

Coordinates

chrUn:+:31204932..31207533

Molecular Weight (calculated)

50504.5 Da

IEP (calculated)

7.798

GRAVY (calculated)

-0.295

Length

449 amino acids

Sequence
(BLAST)

001: MAKTGVLETD PRVAELKKEL QRLVKSIVED DDYSVEVMDR AREALCSIKD LKVKRSMSLK LHGPHSFPEE FRCPLSREMM RDPVILATGQ TYDRPFIQKW
101: LKAGNRTCPL TQQVLSHTML TPNHLIREMI SQWCQSHGIE LTDPDQYSNE DQIMDADRSR FIDLLEKMSS SALEQKEAAK ELRLLTKRMP SFRALFGESL
201: DAIPQLLNPF SQNKGGIHPD LQEDLITTLL NLSIHDNNKK LVAETPMVIP LLMDALKSGT IETRSNAAAT IFTLSALDSN KALIGKSGVL KPLIDLLEEG
301: HPSVMKDVAS AIFNLCIIHE NKSRAVHEGA VKVLMKKIMN QTHVDELLAI LAMLSTHQKA IEEMGDLGAV SCLLTIIRES SCDRNKENCI AILHSVCLND
401: RTKLRELREE ENTYRTISKL SQTGTARAKR KANGILERLR RALNITHTA

Best Arabidopsis Sequence Match ( AT3G07360.1 )
(BLAST)

001: MAKTGVFDSD PTAIAKAKEL KREMKKLLIK IDDEDDLGVQ TIDQLQDALS ALREATMRKM AKSSSLEMLE TVSCPEEFRC PLSNELMRDP VVLASGQTYD
101: KLFIQKWLSS GNRTCPKTQQ VLPHTALTPN LLIREMISKW CKKNGLETKS QYHPNLVNED ETVTRSDREI FNSLLCKVSS SNLQDQKSAA KELRLLTRKG
201: TEFRALFGES PDEITRLVNP LLHGSNPDEK LQEDVVTTLL NISIHDDSNK KLVCENPNVI PLLIDALRRG TVATRSNAAA AIFTLSALDS NKVLIGKSGI
301: LKPLIDLLEE GNPLAIKDVA AAIFTLCIAH ENRSRAVRDG AVRVLGKKIS NGLYVDELLA ILAMLVTHWK AVEELGELGG VSWLLKITRE SECKRNKENA
401: IVILHTICFS DRTKWKEIKE EENAHGTITK LSREGTSRAQ RKANGILDRL RKAMNLTHTA

Arabidopsis Description

PUB9RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VJC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.