Factsheet for VIT_07s0129g00590.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17146	Soybean	cytosol	21.93	78.15
TraesCS3B01G443200.1	Wheat	cytosol, endoplasmic reticulum	22.52	75.2
GSMUA_Achr9P12570_001	Banana	cytosol	25.94	73.33
KRH30135	Soybean	cytosol	66.98	67.78
KRG98177	Soybean	cytosol	66.04	66.59
GSMUA_Achr4P01530_001	Banana	plasma membrane	47.76	66.28
Solyc01g014230.2.1	Tomato	cytosol	62.97	65.84
PGSC0003DMT400046295	Potato	cytosol	63.33	65.41
Solyc12g100000.1.1	Tomato	cytosol, plastid	62.38	64.59
KRH72794	Soybean	plasma membrane	58.25	60.76
CDX76873	Canola	cytosol, plastid	52.12	59.17
TraesCS3B01G422200.1	Wheat	cytosol	30.78	59.05
HORVU3Hr1G081380.1	Barley	cytosol	30.42	58.37
TraesCS3A01G390200.1	Wheat	cytosol	30.19	58.31
TraesCS3D01G382500.1	Wheat	cytosol	30.31	58.14
AT2G23140.1	Thale cress	cytosol	56.6	57.9
CDY18649	Canola	cytosol, plastid	46.34	55.2
CDX81323	Canola	cytosol, plastid	46.7	54.77
AT5G67340.1	Thale cress	cytosol	45.28	54.31
Bra037117.1-P	Field mustard	cytosol, plastid	46.82	54.09
Os08t0110500-01	Rice	plasma membrane	51.53	53.03
HORVU3Hr1G113910.3	Barley	cytosol	51.53	52.15
TraesCS3A01G521300.1	Wheat	cytosol	50.83	51.87
TraesCS3D01G527900.1	Wheat	cytosol	50.71	51.74
PGSC0003DMT400027406	Potato	cytosol	16.27	51.69
TraesCS3B01G591000.1	Wheat	cytosol	50.59	51.62
Zm00001d035040_P007	Maize	mitochondrion	52.36	50.92
Bra032180.1-P	Field mustard	cytosol	34.91	50.68
CDY38931	Canola	cytosol	35.73	49.27
CDY12838	Canola	cytosol	40.57	49.21
CDY57440	Canola	cytosol	37.97	48.86
Bra012155.1-P	Field mustard	cytosol	37.97	48.86
Zm00001d049708_P007	Maize	cytosol	50.35	48.41
EES01872	Sorghum	cytosol	45.28	47.7
VIT_07s0005g03520.t01	Wine grape	cytosol	43.75	47.14
Os01t0884400-01	Rice	plasma membrane	46.46	47.02
TraesCS3B01G443500.1	Wheat	cytosol	27.83	44.61
EES14396	Sorghum	cytosol	52.36	44.09
TraesCS3A01G410100.1	Wheat	cytosol	27.24	43.67
CDY46092	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	53.18	43.66
VIT_18s0001g09130.t01	Wine grape	cytosol	19.58	42.78
Zm00001d042608_P002	Maize	cytosol	45.17	41.41
TraesCS3A01G410000.1	Wheat	cytosol	30.66	41.01
VIT_13s0019g04710.t01	Wine grape	cytosol	29.13	39.33
VIT_00s2269g00010.t01	Wine grape	plastid	19.93	37.39
VIT_06s0004g04530.t01	Wine grape	cytosol	29.36	36.51
VIT_00s0524g00030.t01	Wine grape	cytosol	18.99	35.86
VIT_04s0043g00840.t01	Wine grape	cytosol	18.51	34.51
VIT_03s0038g03660.t01	Wine grape	cytosol	25.94	34.32
VIT_01s0011g04770.t01	Wine grape	cytosol	24.65	32.71
VIT_18s0001g14180.t01	Wine grape	cytosol	26.3	32.6
VIT_13s0067g01460.t01	Wine grape	cytosol	24.53	30.23
VIT_10s0003g01730.t01	Wine grape	mitochondrion	23.35	27.27
VIT_08s0058g01100.t01	Wine grape	plastid	20.4	25.55
VIT_17s0000g08080.t01	Wine grape	cytosol, mitochondrion	19.93	24.89
VIT_01s0026g00190.t01	Wine grape	cytosol	19.46	24.16

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100257770	wikigene:100257770	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	ProteinID:CCB57769	ProteinID:CCB57769.1	ncoils:Coil	UniProt:F6HSV9
EMBL:FN596246	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EntrezGene:LOC100257770	wikigene:LOC100257770
PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF220
SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	TIGR:TC63861	TIGR:TC66514
TIGR:TC66670	UniParc:UPI000210915C	InterPro:Ubox_domain	ArrayExpress:VIT_07s0129g00590	EnsemblPlantsGene:VIT_07s0129g00590	EnsemblPlants:VIT_07s0129g00590.t01
RefSeq:XP_002283956	RefSeq:XP_002283956.2	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6HSV9]

Coordinates

chr7:-:15824528..15832602

Molecular Weight (calculated)

92087.8 Da

IEP (calculated)

6.162

GRAVY (calculated)

-0.258

Length

848 amino acids

Sequence
(BLAST)

001: MGLVCGCSKD CIPMVRFVPQ DQQCEKDYFG VYVEKWRRLM EISLLKRLLN KISSFFLLSS HDNIDSEPVR KYYQKIEEIL KLLKPILSTI IDSEIASDEL
101: LNKAFEELGR SVDDLQELFE NCHPLMSKVY FVLQIELSIS KIRTSGLEIF QQLKSSHQCL PDELSSASLE TCIQKVKHMG YEQTSTILQE AIRNQVQGAG
201: SSSESLMKLA DCLSLRSNQE LLIEAVALEK LKENAEQAEK TEEAEYIDQM ITLATQMHDR FIITKQSQSC NPIPIPADFC CPLSLELMTD PVIVASGQTY
301: ERAFIRKWLD LGLTVCPKTR QTLAHTNLIP NYTVKALIAN WCESNNVKLP DPVKSLNLNQ SSPLLAHAEP GAPRDAHNVP HSRASQPMSP ESTRFTGSPG
401: NNLVSSGGIH REGTSPSHPR SRSEGSLSGV AGNGHGSDIE DRSMDSVGQP STLPSRKESS NSTGADANLC RTASASTLPC NANSSEGTLG ADIGVYSSDV
501: SGEMTPEPQA AAANLTTPQR EPDFPLRLET RARSQAMWRR PSERFVPRIV SSPTTETRAD LSGVEAQVQR LVEDLKSESV ETQREATSEL RLLAKHNMDN
601: RIVIANCGAI SLLVNLLRSE DAKAQENAVT ALLNLSINDN NKTAIANAQA IEPLIHVLQT GSPEAKENSA ATLFSLSVIE DNKAAIGRSG AIAPLVELLG
701: NGTPRGKKDA ATALFNLSIF HENKTRIVQA GAVRHLVELM DPAAGMVDKA VAVLANLATI TEGRHAIDQA GGIPVLVEVV ELGSARGKEN AAAALLQLCS
801: NSSRSCIKVL QEGAVPPLVA LSQSGTPRAK EKAQALLNCF RSRHAGRG

Best Arabidopsis Sequence Match ( AT2G23140.1 )
(BLAST)

001: MVEMEVLLRS ISSFLNLSSS KHIDLDPFEK YYKRVEELLR VLKPIADVVV TSDFVFDEKL GKAFEELTQD VDQSIDLFRS WQAFSSKVYF VLQIESLLPK
101: MRDTIVDTFQ FLMSSKNHLP DELSPASLEQ CLEKIKHLSY EEISSVIDGA LRDQRDGVGP SPEILVKIGE NTGLRSNQEI LIEAVALERQ KEMAEQSENN
201: AEVEFLDQLI VIVNRMHERL LLIKQTQTSS VAILADFFCP LSLEVMTDPV IVSSGQTYEK AFIKRWIDLG LKVCPKTRQT LTHTTLIPNY TVKALIANWC
301: ETNDVKLPDP NKSTSLNELS PLLSCTDSIP STGADVSARK VSNKSHDWDA SSSETGKPSF SSRATEREGA SPSRPASALG ASSPGISGNG YGLDARRGSL
401: NDFEDRSNDS RELRTDAPGR SSVSSTTRGS VENGQTSENH HHRSPSATST VSNEEFPRAD ANENSEESAH ATPYSSDASG EIRSGPLAAT TSAATRRDLS
501: DFSPKFMDRR TRGQFWRRPS ERLGSRIVSA PSNETRRDLS EVETQVKKLV EELKSSSLDT QRQATAELRL LAKHNMDNRI VIGNSGAIVL LVELLYSTDS
601: ATQENAVTAL LNLSINDNNK KAIADAGAIE PLIHVLENGS SEAKENSAAT LFSLSVIEEN KIKIGQSGAI GPLVDLLGNG TPRGKKDAAT ALFNLSIHQE
701: NKAMIVQSGA VRYLIDLMDP AAGMVDKAVA VLANLATIPE GRNAIGQEGG IPLLVEVVEL GSARGKENAA AALLQLSTNS GRFCNMVLQE GAVPPLVALS
801: QSGTPRAREK AQALLSYFRN QRHGNAGRG

Arabidopsis Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F4ILG6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.