Factsheet for TraesCS3A01G521300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G527900.1	Wheat	cytosol	98.92	98.92
TraesCS3B01G591000.1	Wheat	cytosol	97.83	97.83
HORVU3Hr1G113910.3	Barley	cytosol	95.79	94.99
Os08t0110500-01	Rice	plasma membrane	85.44	86.17
TraesCS3A01G390200.1	Wheat	cytosol	44.65	84.51
Zm00001d035040_P007	Maize	mitochondrion	81.35	77.52
KRH17146	Soybean	cytosol	22.02	76.89
Zm00001d049708_P007	Maize	cytosol	78.22	73.7
GSMUA_Achr9P12570_001	Banana	cytosol	26.59	73.67
EES14396	Sorghum	cytosol	82.31	67.92
GSMUA_Achr4P01530_001	Banana	plasma membrane	47.77	64.98
CDX76873	Canola	cytosol, plastid	47.41	52.74
TraesCS3A01G410000.1	Wheat	cytosol	39.83	52.21
Solyc01g014230.2.1	Tomato	cytosol	50.42	51.66
KRH30135	Soybean	cytosol	51.99	51.55
KRG98177	Soybean	cytosol	52.11	51.49
TraesCS3A01G410100.1	Wheat	cytosol	32.73	51.42
PGSC0003DMT400046295	Potato	cytosol	50.66	51.28
VIT_07s0129g00590.t01	Wine grape	cytosol	51.87	50.83
AT2G23140.1	Thale cress	cytosol	49.7	49.82
Solyc12g100000.1.1	Tomato	cytosol, plastid	49.1	49.82
KRH72794	Soybean	plasma membrane	48.38	49.45
PGSC0003DMT400027406	Potato	cytosol	15.16	47.19
CDY18649	Canola	cytosol, plastid	40.31	47.05
CDX81323	Canola	cytosol, plastid	40.55	46.61
Bra037117.1-P	Field mustard	cytosol, plastid	40.67	46.05
AT5G67340.1	Thale cress	cytosol	38.51	45.26
Bra032180.1-P	Field mustard	cytosol	30.93	44.01
CDY38931	Canola	cytosol	32.13	43.41
TraesCS2A01G193000.1	Wheat	cytosol	17.69	40.72
Bra012155.1-P	Field mustard	cytosol	32.25	40.67
CDY57440	Canola	cytosol	32.25	40.67
CDY12838	Canola	cytosol	34.18	40.63
TraesCS2A01G190800.1	Wheat	cytosol	20.1	38.3
CDY46092	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	47.29	38.04
TraesCS7A01G001900.1	Wheat	cytosol	23.95	37.55
TraesCS4A01G498700.1	Wheat	plastid	25.63	33.65
TraesCS7A01G549700.1	Wheat	cytosol	23.95	30.8
TraesCS5A01G078400.1	Wheat	cytosol	25.15	30.56
TraesCS6A01G293600.1	Wheat	cytosol	23.35	30.27
TraesCS7A01G293900.1	Wheat	cytosol	23.1	29.81
TraesCS2A01G276400.1	Wheat	nucleus	16.37	29.57
TraesCS4A01G097700.1	Wheat	cytosol	25.15	29.23
TraesCS1A01G300000.1	Wheat	cytosol	20.1	25.0
TraesCS3A01G345800.1	Wheat	plastid	19.61	23.87
TraesCS6A01G190700.1	Wheat	plastid	20.58	23.59
TraesCS2A01G475600.1	Wheat	cytosol, plasma membrane	18.65	22.43
TraesCS5A01G198800.1	Wheat	cytosol, plasma membrane	16.97	20.11

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF220	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS3A01G521300	EnsemblPlants:TraesCS3A01G521300.1	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	TIGR:cd16664	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3A:-:737968336..737972991

Molecular Weight (calculated)

89822.3 Da

IEP (calculated)

5.158

GRAVY (calculated)

-0.269

Length

831 amino acids

Sequence
(BLAST)

001: MEDFSPRTLL DSISHLTALT SDGSTARPKP IQKYCQNVCD ISSIVSPLIE DICKSPVEQL NDVLRELDTA INEASGLIGN WHQTTSKIYF VWQIESVISD
101: IQGCSLQLCQ LANSLLPSLT GCACICIQKL QDINYEHMFD LAKEVATKLN GNDTQSPENL SIVSSSLSLS TNLELYMEAV SLENLRTRAM RSENRKELEL
201: AEEMIPMVNY MHERLLRETQ LLNINGVPIP ADFCCPLSLE LMSDPVILAS GQTYERVYIK LWLDEGFTIC PKTRQRLAHS NLIPNYTVKA LISNWCESHD
301: IKLPDPVKSL KLNFPSAASS LQDLSATGNS PLHPSAGRGN IPGSPEADLY MKSLNRASPS HSAVHQNSDA LVNRPGHEAS TNQSSDYANG SAPDISRLSL
401: ASSEARESSV EERHAGSNVQ TSEQSTDEAF QASLLDGDSQ DHVGSSSVNG SLPNSGQLDG ECDDANGMVR IPGDRTNYSS DASGEVADGG PSVSSAPQRE
501: NVMLPRLGDL RMRGQFVRRQ PSDRGFPRIT SPSSMDARGD LSAIENQVRK LIDDLRSDSI EAQRSATSEI RLLAKHNMEN RIVIANCGAI NLLVGLLHST
601: DAKIQENAVT ALLNLSINDN NKIAIASEDA VDPLIHVLET GNPEAKENSA ATLFSLSVIE ENKVRIGRSG AVKPLVDLLG NGTPRGKKDA ATALFNLSIL
701: HENKGRIVQA DAVKYLVELM DPAAGMVDKA VAVLANLATI PEGRTAIGQA RGIPALVEVV ELGSARGKEN AAAALLQLCT NSNRFCSIVL QEGAVPPLVA
801: LSQSGTPRAR EKAQALLSYF RSQRHGNSAR R

Best Arabidopsis Sequence Match ( AT2G23140.1 )
(BLAST)

001: MVEMEVLLRS ISSFLNLSSS KHIDLDPFEK YYKRVEELLR VLKPIADVVV TSDFVFDEKL GKAFEELTQD VDQSIDLFRS WQAFSSKVYF VLQIESLLPK
101: MRDTIVDTFQ FLMSSKNHLP DELSPASLEQ CLEKIKHLSY EEISSVIDGA LRDQRDGVGP SPEILVKIGE NTGLRSNQEI LIEAVALERQ KEMAEQSENN
201: AEVEFLDQLI VIVNRMHERL LLIKQTQTSS VAILADFFCP LSLEVMTDPV IVSSGQTYEK AFIKRWIDLG LKVCPKTRQT LTHTTLIPNY TVKALIANWC
301: ETNDVKLPDP NKSTSLNELS PLLSCTDSIP STGADVSARK VSNKSHDWDA SSSETGKPSF SSRATEREGA SPSRPASALG ASSPGISGNG YGLDARRGSL
401: NDFEDRSNDS RELRTDAPGR SSVSSTTRGS VENGQTSENH HHRSPSATST VSNEEFPRAD ANENSEESAH ATPYSSDASG EIRSGPLAAT TSAATRRDLS
501: DFSPKFMDRR TRGQFWRRPS ERLGSRIVSA PSNETRRDLS EVETQVKKLV EELKSSSLDT QRQATAELRL LAKHNMDNRI VIGNSGAIVL LVELLYSTDS
601: ATQENAVTAL LNLSINDNNK KAIADAGAIE PLIHVLENGS SEAKENSAAT LFSLSVIEEN KIKIGQSGAI GPLVDLLGNG TPRGKKDAAT ALFNLSIHQE
701: NKAMIVQSGA VRYLIDLMDP AAGMVDKAVA VLANLATIPE GRNAIGQEGG IPLLVEVVEL GSARGKENAA AALLQLSTNS GRFCNMVLQE GAVPPLVALS
801: QSGTPRAREK AQALLSYFRN QRHGNAGRG

Arabidopsis Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F4ILG6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.