Factsheet for TraesCS3D01G527900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G521300.1	Wheat	cytosol	98.92	98.92
TraesCS3B01G591000.1	Wheat	cytosol	98.56	98.56
HORVU3Hr1G113910.3	Barley	cytosol	96.39	95.58
Os08t0110500-01	Rice	plasma membrane	85.44	86.17
TraesCS3D01G382500.1	Wheat	cytosol	45.61	85.75
Zm00001d035040_P007	Maize	mitochondrion	81.47	77.64
KRH17146	Soybean	cytosol	22.14	77.31
GSMUA_Achr9P12570_001	Banana	cytosol	26.71	74.0
Zm00001d049708_P007	Maize	cytosol	78.46	73.92
EES14396	Sorghum	cytosol	82.55	68.12
GSMUA_Achr4P01530_001	Banana	plasma membrane	48.01	65.3
CDX76873	Canola	cytosol, plastid	47.65	53.01
Solyc01g014230.2.1	Tomato	cytosol	50.42	51.66
KRH30135	Soybean	cytosol	51.99	51.55
PGSC0003DMT400046295	Potato	cytosol	50.9	51.52
KRG98177	Soybean	cytosol	51.99	51.37
VIT_07s0129g00590.t01	Wine grape	cytosol	51.74	50.71
Solyc12g100000.1.1	Tomato	cytosol, plastid	49.34	50.06
AT2G23140.1	Thale cress	cytosol	49.82	49.94
KRH72794	Soybean	plasma membrane	48.26	49.32
PGSC0003DMT400027406	Potato	cytosol	15.28	47.57
CDY18649	Canola	cytosol, plastid	40.19	46.91
CDX81323	Canola	cytosol, plastid	40.43	46.47
Bra037117.1-P	Field mustard	cytosol, plastid	40.55	45.91
AT5G67340.1	Thale cress	cytosol	38.39	45.12
Bra032180.1-P	Field mustard	cytosol	31.05	44.18
CDY38931	Canola	cytosol	32.25	43.58
TraesCS2D01G194400.1	Wheat	cytosol	17.81	41.0
CDY57440	Canola	cytosol	32.25	40.67
Bra012155.1-P	Field mustard	cytosol	32.25	40.67
CDY12838	Canola	cytosol	34.06	40.49
CDY46092	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	47.53	38.24
TraesCS2D01G197200.1	Wheat	plastid	20.58	37.25
TraesCS7D01G001600.2	Wheat	cytosol, plastid	25.87	35.71
TraesCS7D01G536300.1	Wheat	cytosol	23.95	30.85
TraesCS5D01G093700.1	Wheat	cytosol	24.91	30.26
TraesCS7D01G289800.1	Wheat	cytosol	23.35	30.12
TraesCS6D01G274500.1	Wheat	cytosol	23.23	30.11
TraesCS2D01G275400.1	Wheat	nucleus	16.37	29.57
TraesCS4D01G207700.2	Wheat	plastid	25.15	26.9
TraesCS1D01G299400.1	Wheat	cytosol, plastid	20.1	25.04
TraesCS3D01G339600.1	Wheat	plastid	19.74	23.8
TraesCS6D01G180400.1	Wheat	plastid	20.7	23.72
TraesCS2D01G475600.1	Wheat	cytosol, plasma membrane	18.41	22.21
TraesCS5D01G204700.1	Wheat	cytosol, plasma membrane	17.09	20.26

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF220	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS3D01G527900	EnsemblPlants:TraesCS3D01G527900.1	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	TIGR:cd16664	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3D:+:606297077..606301216

Molecular Weight (calculated)

89807.2 Da

IEP (calculated)

5.157

GRAVY (calculated)

-0.273

Length

831 amino acids

Sequence
(BLAST)

001: MEDFSPRTLL DSISHLSALT SDGSTARPKP IQNYCQNVCD ISSIVSPLIE DICKSPEEQL NEVLRELDTA INEASGLIGN WHQTTSKIYF VWQIESVISD
101: IQGCSLQLCQ LANSLLPSLT GCACICIQKL QDINYEHMFD LAREVATKLN GNDTQSPENL SIVSSSLSLS TNLELYMEAV SLENLRTRAM RSENRKELEL
201: AEEMIPMVNY MHERLLRETQ LLNINGVPIP ADFCCPLSLE LMSDPVILAS GQTYERVYIK LWLDEGFTIC PKTRQRLAHS NLIPNYTVKA LISNWCESHD
301: IKLPDPVKSL KLNFPSAASS LQDLSATGNS PLHPSAGRGN IPGSPEADLY MKSLNRASPS HSAVHQNSDA LVNRPGHEAS TNQSSDYANG SAPDISRLSL
401: ASSEARESSL EERHAGSNVQ TSEQSTDEAF QASLLNGDSQ DHVGSSSVNG SLPNSGQLDG ECDDANGMVR VPGDRTNYSS DASGEVADGG PSVSSAPQRE
501: NVMLPRLGDL RMRGQFVRRQ PSDRGFPRIT SPSSMDARGD LSAIENQVRK LIDDLRSDSI EAQRSATSEI RLLAKHNMEN RIVIANCGAI NLLVGLLHST
601: DAKIQENAVT ALLNLSINDN NKIAIASADA VDPLIHVLET GNPEAKENSA ATLFSLSVIE ENKVRIGRSG AVKPLVDLLG NGTPRGKKDA ATALFNLSIL
701: HENKGRIVQA DAVKYLVELM DPAAGMVDKA VAVLANLATI PEGRTAIGQA RGIPALVEVV ELGSARGKEN AAAALLQLCT NSNRFCSIVL QEGAVPPLVA
801: LSQSGTPRAR EKAQALLSYF RSQRHGNSAR R

Best Arabidopsis Sequence Match ( AT2G23140.4 )
(BLAST)

001: MEVLLRSISS FLNLSSSKHI DLDPFEKYYK RVEELLRVLK PIADVVVTSD FVFDEKLGKA FEELTQDVDQ SIDLFRSWQA FSSKVYFVLQ IESLLPKMRD
101: TIVDTFQFLM SSKNHLPDEL SPASLEQCLE KIKHLSYEEI SSVIDGALRD QRDGVGPSPE ILVKIGENTG LRSNQEILIE AVALERQKEM AEQSENNAEV
201: EFLDQLIVIV NRMHERLLLI KQTQTSSVAI LADFFCPLSL EVMTDPVIVS SGQTYEKAFI KRWIDLGLKV CPKTRQTLTH TTLIPNYTVK ALIANWCETN
301: DVKLPDPNKS TSLNELSPLL SCTDSIPSTG ADVSARKVSN KSHDWDASSS ETGKPSFSSR ATEREGASPS RPASALGASS PGISGNGYGL DARRGSLNDF
401: EDRSNDSREL RTDAPGRSSV SSTTRGSVEN GQTSENHHHR SPSATSTVSN EEFPRADANE NSEESAHATP YSSDASGEIR SGPLAATTSA ATRRDLSDFS
501: PKFMDRRTRG QFWRRPSERL GSRIVSAPSN ETRRDLSEVE TQVKKLVEEL KSSSLDTQRQ ATAELRLLAK HNMDNRIVIG NSGAIVLLVE LLYSTDSATQ
601: ENAVTALLNL SINDNNKKAI ADAGAIEPLI HVLENGSSEA KENSAATLFS LSVIEENKIK IGQSGAIGPL VDLLGNGTPR GKKDAATALF NLSIHQENKA
701: MIVQSGAVRY LIDLMDPAAG MVDKAVAVLA NLATIPEGRN AIGQEGGIPL LVEVVELGSA RGKENAAAAL LQLSTNSGRF CNMVLQEGAV PPLVALSQSG
801: TPRAREKAQA LLSYFRNQRH GNAGRG

Arabidopsis Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F4ILG6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.