Factsheet for TraesCS3D01G339600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G377600.1	Wheat	plastid	99.13	99.42
TraesCS3A01G345800.1	Wheat	plastid	98.26	99.12
HORVU3Hr1G081300.1	Barley	plastid	97.53	97.67
Os01t0823900-01	Rice	plastid	86.94	88.09
Zm00001d043043_P001	Maize	cytosol	82.0	85.22
Zm00001d012494_P001	Maize	cytosol	81.86	85.07
KXG33626	Sorghum	plastid	84.33	82.76
TraesCS1D01G299400.1	Wheat	cytosol, plastid	74.6	77.06
GSMUA_Achr8P25140_001	Banana	plastid	36.43	59.76
GSMUA_Achr7P22130_001	Banana	cytosol	49.35	53.71
GSMUA_Achr4P00200_001	Banana	plastid	53.85	52.7
Bra001998.1-P	Field mustard	cytosol	38.17	44.05
Solyc09g018230.1.1	Tomato	plastid	43.54	43.6
PGSC0003DMT400071349	Potato	plastid	43.69	43.5
AT5G01830.1	Thale cress	plastid	42.38	43.32
VIT_08s0058g01100.t01	Wine grape	plastid	42.53	43.28
CDX71307	Canola	cytosol	41.94	42.94
Bra019022.1-P	Field mustard	cytosol	41.94	42.88
CDY31406	Canola	cytosol	41.8	42.73
KRH76105	Soybean	cytosol, plastid	41.51	40.74
KRH65448	Soybean	plastid	27.87	39.34
TraesCS6D01G180400.1	Wheat	plastid	35.12	33.38
TraesCS7D01G001600.2	Wheat	cytosol, plastid	25.4	29.07
TraesCS2D01G194400.1	Wheat	cytosol	14.8	28.25
TraesCS2D01G275400.1	Wheat	nucleus	18.43	27.61
TraesCS5D01G093700.1	Wheat	cytosol	26.85	27.05
TraesCS2D01G475600.1	Wheat	cytosol, plasma membrane	27.0	27.0
TraesCS6D01G274500.1	Wheat	cytosol	24.82	26.68
TraesCS7D01G289800.1	Wheat	cytosol	24.67	26.4
TraesCS5D01G204700.1	Wheat	cytosol, plasma membrane	26.85	26.39
TraesCS7D01G536300.1	Wheat	cytosol	24.09	25.74
TraesCS4D01G207700.2	Wheat	plastid	28.45	25.23
TraesCS2D01G197200.1	Wheat	plastid	16.26	24.4
TraesCS3D01G382500.1	Wheat	cytosol	14.51	22.62
TraesCS3D01G527900.1	Wheat	cytosol	23.8	19.74

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF147	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS3D01G339600	EnsemblPlants:TraesCS3D01G339600.1	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	TIGR:cd16664	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3D:-:452617491..452619560

Molecular Weight (calculated)

73220.9 Da

IEP (calculated)

5.663

GRAVY (calculated)

0.038

Length

689 amino acids

Sequence
(BLAST)

001: MAKPRAVVTT ACASASAAPS TSYASAFLPP PPSPSDGDLL RSLHRLARDL SAADAPAPFL RAAFASVSRR ARLLAAAFDD LLLCAAGEGD LPRSASLCLR
101: EVLLVLQRFK AVVADCAARS RTLLLLQSDE TDAELRDLHH DLATLLDLLP VVELGLADDV MDLLALASRQ CRRCASAAEP EPALKTTVLS LIEEIEREIV
201: PERERLEEIL EEVGINDPAS CSDEIESLER EIGDRASERW TAAMIALVGL LRYAKCVLFS ATPRPSDSKA DVDVEDDGES PAPPPDLRCP ISLDLMRDPV
301: VAASGQTYDR ESIDRWFSSG KSTCPKTGQV LANLELVPNK SLKNLISKWC RENGVAMEVC EASKSEQAQA VAANKAALEV ARMTASYLVK KLSVSFSPDA
401: ANRVVHEIRL LSKSGSDNRA FVGEAGAVPM LVPLLYSEDA GLQLNAVTAL LNLSILEANK KRIMHADGAV EAVTHIMSSG TTWRAKENAA AAVLSLASVH
501: TYRRRLGRNP SVVEKLVHLV RTGPTSTKKD ALAALLSLAG ERENVGKLVE AGVAEAALSA ISDEETAAAV LAALAKRGGA EAIVSIDGAV ARLVAEMRRG
601: TEWARESATA ALVLLCRRLG ARAVTQVMGV AGVEWAIWEL MGTGTDRARR KAASLGRICR RWAAASAADG ERGAECPASS VVPPAMMAS

Best Arabidopsis Sequence Match ( AT1G23030.1 )
(BLAST)

001: MAGGIVSPAS LLDLIADIVE IPLNTGMFKK DCADLTRRVC LLTHLLEEIR DSTPIDSAAS SSSENDWWSD LVVGLQAAKR LLSTARFQAR DSSDGAAKRI
101: SFQFQCVTWK LEKALSNLPY DLYDISDEVG EQVELARSQL RRAMQRYGSL NSNKFSSALS EPMERDGFSN VIKIKAEEKL ESVSETLHFG EEEEKQSSPP
201: LRRSSSISLA YYLSKDADTD RLDKMVNKNT DESKKSDKLT IPVDFLCPVS LELMKDPVIV ATGQTYERAY IQRWIDCGNL TCPKTQQKLE NFTLTPNYVL
301: RSLISRWCAE HNIEQPAGYI NGRTKNSGDM SVIRALVQRL SSRSTEDRRN AVSEIRSLSK RSTDNRILIA EAGAIPVLVN LLTSEDVATQ ENAITCVLNL
401: SIYENNKELI MFAGAVTSIV QVLRAGTMEA RENAAATLFS LSLADENKII IGGSGAIPAL VDLLENGTPR GKKDAATALF NLCIYHGNKG RAVRAGIVTA
501: LVKMLSDSTR HRMVDEALTI LSVLANNQDA KSAIVKANTL PALIGILQTD QTRNRENAAA ILLSLCKRDT EKLITIGRLG AVVPLMDLSK NGTERGKRKA
601: ISLLELLRKA CQ

Arabidopsis Description

PUB11RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WCR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.