Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019022.1-P | Field mustard | cytosol | 99.55 | 99.55 |
| Bra001998.1-P | Field mustard | cytosol | 88.13 | 99.5 |
| CDX71307 | Canola | cytosol | 98.96 | 99.11 |
| AT5G01830.1 | Thale cress | plastid | 83.53 | 83.53 |
| VIT_08s0058g01100.t01 | Wine grape | plastid | 58.16 | 57.9 |
| Solyc09g018230.1.1 | Tomato | plastid | 56.82 | 55.67 |
| PGSC0003DMT400071349 | Potato | plastid | 57.12 | 55.64 |
| KRH76105 | Soybean | cytosol, plastid | 53.71 | 51.57 |
| KRH65448 | Soybean | plastid | 36.65 | 50.61 |
| GSMUA_Achr8P25140_001 | Banana | plastid | 31.16 | 50.0 |
| Zm00001d012494_P001 | Maize | cytosol | 43.32 | 44.04 |
| Zm00001d043043_P001 | Maize | cytosol | 42.43 | 43.14 |
| TraesCS1A01G300000.1 | Wheat | cytosol | 42.28 | 42.66 |
| OQU78182 | Sorghum | plastid | 42.73 | 42.42 |
| Zm00001d038471_P001 | Maize | cytosol, plasma membrane, plastid | 42.14 | 42.39 |
| GSMUA_Achr7P22130_001 | Banana | cytosol | 39.76 | 42.34 |
| TraesCS3A01G345800.1 | Wheat | plastid | 42.73 | 42.17 |
| Os05t0476700-01 | Rice | plastid | 42.28 | 42.1 |
| Os01t0823900-01 | Rice | plastid | 42.43 | 42.06 |
| GSMUA_Achr4P00200_001 | Banana | plastid | 43.92 | 42.05 |
| HORVU3Hr1G081300.1 | Barley | plastid | 42.88 | 42.01 |
| HORVU1Hr1G069990.1 | Barley | plastid | 42.43 | 41.94 |
| TraesCS3B01G377600.1 | Wheat | plastid | 42.73 | 41.92 |
| TraesCS3D01G339600.1 | Wheat | plastid | 42.73 | 41.8 |
| TraesCS1B01G310100.1 | Wheat | plastid | 41.69 | 41.69 |
| TraesCS1D01G299400.1 | Wheat | cytosol, plastid | 41.25 | 41.68 |
| KXG33626 | Sorghum | plastid | 42.58 | 40.88 |
| CDY43332 | Canola | mitochondrion | 37.54 | 35.19 |
| CDX94661 | Canola | plastid | 37.09 | 35.16 |
| CDX90186 | Canola | mitochondrion | 36.94 | 34.92 |
| CDY48332 | Canola | mitochondrion, plastid | 35.91 | 34.38 |
| CDX99816 | Canola | plastid | 35.46 | 33.01 |
| CDY37666 | Canola | cytosol, plastid | 31.16 | 31.77 |
| CDY43686 | Canola | plastid | 31.16 | 31.77 |
| CDY28679 | Canola | cytosol | 12.02 | 30.8 |
| CDX78273 | Canola | cytosol | 27.3 | 29.02 |
| CDY25764 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 24.78 | 28.4 |
| CDX68380 | Canola | cytosol | 22.26 | 28.2 |
| CDY04747 | Canola | cytosol, golgi | 18.4 | 28.12 |
| CDY31736 | Canola | cytosol | 26.71 | 28.04 |
| CDX77213 | Canola | cytosol | 26.71 | 27.99 |
| CDY04746 | Canola | cytosol, endoplasmic reticulum | 25.22 | 27.91 |
| CDY12497 | Canola | cytosol | 24.63 | 27.81 |
| CDY21412 | Canola | cytosol, endoplasmic reticulum | 25.07 | 27.8 |
| CDX96295 | Canola | cytosol, plasma membrane | 25.37 | 27.76 |
| CDX74050 | Canola | cytosol | 18.55 | 27.41 |
| CDY24520 | Canola | cytosol | 27.3 | 27.3 |
| CDX72769 | Canola | cytosol | 24.48 | 26.96 |
| CDX68379 | Canola | cytosol | 26.26 | 26.9 |
| CDY68037 | Canola | cytosol | 26.11 | 26.87 |
| CDX99112 | Canola | cytosol | 26.11 | 26.87 |
| CDY28059 | Canola | cytosol | 18.4 | 26.84 |
| CDY71737 | Canola | cytosol | 18.4 | 26.84 |
| CDX95193 | Canola | cytosol | 25.96 | 26.72 |
| CDX86080 | Canola | cytosol | 25.96 | 26.68 |
| CDY54132 | Canola | cytosol | 26.85 | 26.62 |
| CDY08002 | Canola | cytosol | 17.95 | 26.59 |
| CDY04344 | Canola | cytosol | 11.87 | 25.08 |
| CDY38506 | Canola | cytosol | 16.77 | 24.78 |
| CDY04342 | Canola | cytosol | 12.17 | 24.62 |
| CDY68352 | Canola | cytosol | 16.62 | 24.56 |
| CDY18649 | Canola | cytosol, plastid | 25.22 | 23.88 |
| CDY32692 | Canola | peroxisome | 12.46 | 23.8 |
| CDX91947 | Canola | plastid | 12.46 | 23.8 |
| CDX74298 | Canola | plastid | 12.31 | 23.45 |
| CDX76873 | Canola | cytosol, plastid | 25.82 | 23.29 |
| CDX81323 | Canola | cytosol, plastid | 24.93 | 23.24 |
| CDY02828 | Canola | cytosol | 12.17 | 23.16 |
| CDY55050 | Canola | cytosol | 23.74 | 22.99 |
| CDX93411 | Canola | mitochondrion | 23.44 | 22.64 |
| CDY38931 | Canola | cytosol | 20.18 | 22.11 |
| CDY57440 | Canola | cytosol | 21.36 | 21.85 |
| CDX90518 | Canola | plastid | 14.69 | 21.76 |
| CDY12838 | Canola | cytosol | 22.55 | 21.75 |
| CDX73449 | Canola | cytosol | 22.55 | 21.59 |
| CDY64696 | Canola | cytosol, extracellular, mitochondrion, plastid | 23.59 | 21.54 |
| CDY02891 | Canola | cytosol | 23.44 | 21.44 |
| CDX78262 | Canola | cytosol | 22.11 | 21.23 |
| CDY09688 | Canola | cytosol | 13.95 | 20.7 |
| CDX73439 | Canola | plastid | 27.15 | 20.31 |
| CDX70810 | Canola | cytosol | 13.8 | 19.7 |
| CDY51235 | Canola | extracellular, golgi | 14.69 | 19.08 |
| CDY46092 | Canola | endoplasmic reticulum, golgi, plasma membrane, plastid | 25.82 | 16.84 |
| CDX70805 | Canola | cytosol | 15.73 | 6.88 |
| CDY51234 | Canola | cytosol | 15.28 | 6.22 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078H0U4 | UniProt:A0A078H0U4 | InterPro:ARM-type_fold | InterPro:Armadillo |
| EnsemblPlants:CDY31406 | ProteinID:CDY31406 | ProteinID:CDY31406.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00047624001 | InterPro:IPR000225 |
| InterPro:IPR003613 | InterPro:IPR013083 | PFAM:PF00514 | PFAM:PF04564 | PFscan:PS50176 | PFscan:PS51698 |
| PANTHER:PTHR23315 | PANTHER:PTHR23315:SF63 | SMART:SM00185 | SMART:SM00504 | SUPFAM:SSF48371 | SUPFAM:SSF57850 |
| UniPathway:UPA00143 | UniParc:UPI0004EEA7F4 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
BnaA07g03410DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078H0U4]
Coordinates
chrLK032271:+:365757..367781
Molecular Weight (calculated)
74325.0 Da
IEP (calculated)
6.894
GRAVY (calculated)
-0.022
Length
674 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVTLEVTPT RKRRPLVVGH LDSPNISDTK LFRSLFFASQ EFSHMQPLRF ILRRNSQSII RKVKVLAAVF DELLRSHMVY SQSAQLCFEE MNIVMQRMKT
101: LIEDCTRSSK LWLLLQIENV SFSFHELVAD LSTVLDILPV NDFNLSEDAE DLILLLKKQC SDSIQFVDPR DDDLRRKVTD TIDGIKHQIV PDQSKLIGIF
201: NDLGLLDSAS LIEEIQRLED ETHDQIDERS RIAAASLIGL VRYANCVLYG PSTPSPHPDF RRHKSLSEAN IPADFRCPIT LELMRDPVVV STGQTYDRES
301: IDLWIKSGHN TCPKTGQVLK HTNLIPNSAL KNLIVMWCRD QKIPFEIYGD GGVGSSTPCT EAVEFTRMMV SFLIDKLISV AEPNAVVFEL RALAKSDSVA
401: RACIAEAGAI PKLVRYLGSD SPSLQINAVT AILNLSILEQ NKTRIMETDG ALNGVIEVLR SGATWEAKAN AAATLFSLAS ISTYKRRLGR KVRVVSGLVD
501: LAKQGPTSSK RDAFVAILNL AAERENVGRF VEAGVVQAAG DAFRELPEEA VSVVEAIVRK GGLMAVSAAF GLIRQLGEMM REGGDTTKES AAATLVTMCR
601: KGGSELVAEM ATIPGIERVI WEMIGTGTAR GGRKAASLMR YLRRWAAGDT HETAATETQS IVVPTPSRIF NPVL
101: LIEDCTRSSK LWLLLQIENV SFSFHELVAD LSTVLDILPV NDFNLSEDAE DLILLLKKQC SDSIQFVDPR DDDLRRKVTD TIDGIKHQIV PDQSKLIGIF
201: NDLGLLDSAS LIEEIQRLED ETHDQIDERS RIAAASLIGL VRYANCVLYG PSTPSPHPDF RRHKSLSEAN IPADFRCPIT LELMRDPVVV STGQTYDRES
301: IDLWIKSGHN TCPKTGQVLK HTNLIPNSAL KNLIVMWCRD QKIPFEIYGD GGVGSSTPCT EAVEFTRMMV SFLIDKLISV AEPNAVVFEL RALAKSDSVA
401: RACIAEAGAI PKLVRYLGSD SPSLQINAVT AILNLSILEQ NKTRIMETDG ALNGVIEVLR SGATWEAKAN AAATLFSLAS ISTYKRRLGR KVRVVSGLVD
501: LAKQGPTSSK RDAFVAILNL AAERENVGRF VEAGVVQAAG DAFRELPEEA VSVVEAIVRK GGLMAVSAAF GLIRQLGEMM REGGDTTKES AAATLVTMCR
601: KGGSELVAEM ATIPGIERVI WEMIGTGTAR GGRKAASLMR YLRRWAAGDT HETAATETQS IVVPTPSRIF NPVL
001: MAVTLDSPSP ARKRRPLVVG SFESPKLSSD TKLTRSLFLA SHEISSMQPL PFILRRNSLS LIRKVKILAS VFDELLLPRS QLVVYSQSAH LCFEEMQIVM
101: QRIKSLIDDC SRVSKLWLLL QIDIVAFNFH ELVTDLSTVL DILPLHDFDL SDDAQDLISL LTKQCSDSVQ FVDARDVALR RKVTDTIAGI KHQISPDHST
201: LIKIFNDLGL SDSASLTDEI QRLEDEIQDQ IDDRSKSAAA SLIGLVRYSK CVLYGPSTPA PDFRRHQSLS DANIPADFRC PITLELMRDP VVVATGQTYD
301: RESIDLWIQS GHNTCPKTGQ VLKHTSLVPN RALKNLIVLW CRDQKIPFEL YGDGGGEPAP CKEAVEFTKM MVSFLIEKLS VADSNGVVFE LRALAKSDTV
401: ARACIAEAGA IPKLVRYLAT ECPSLQINAV TTILNLSILE QNKTRIMETD GALNGVIEVL RSGATWEAKA NAAATLFSLA GVSAYRRRLG RKARVVSGLV
501: DLAKQGPTSS KRDALVAILN LVAERENVGR FVEAGVMGAA GDAFQELPEE AVAVVEAVVR RGGLMAVSAA FSLIRLLGEV MREGADTTRE SAAATLVTMC
601: RKGGSELVAE MAAIPGIERV IWEMIGAGTA RGGRKAASLM RYLRRWAAGD THNTAAETQS IVVPTPSRIF SPVL
101: QRIKSLIDDC SRVSKLWLLL QIDIVAFNFH ELVTDLSTVL DILPLHDFDL SDDAQDLISL LTKQCSDSVQ FVDARDVALR RKVTDTIAGI KHQISPDHST
201: LIKIFNDLGL SDSASLTDEI QRLEDEIQDQ IDDRSKSAAA SLIGLVRYSK CVLYGPSTPA PDFRRHQSLS DANIPADFRC PITLELMRDP VVVATGQTYD
301: RESIDLWIQS GHNTCPKTGQ VLKHTSLVPN RALKNLIVLW CRDQKIPFEL YGDGGGEPAP CKEAVEFTKM MVSFLIEKLS VADSNGVVFE LRALAKSDTV
401: ARACIAEAGA IPKLVRYLAT ECPSLQINAV TTILNLSILE QNKTRIMETD GALNGVIEVL RSGATWEAKA NAAATLFSLA GVSAYRRRLG RKARVVSGLV
501: DLAKQGPTSS KRDALVAILN LVAERENVGR FVEAGVMGAA GDAFQELPEE AVAVVEAVVR RGGLMAVSAA FSLIRLLGEV MREGADTTRE SAAATLVTMC
601: RKGGSELVAE MAAIPGIERV IWEMIGAGTA RGGRKAASLM RYLRRWAAGD THNTAAETQS IVVPTPSRIF SPVL
Arabidopsis Description
PUB16RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178UNI7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.