CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69199
CDX71145
CDX72576
CDX72699
CDX73439
CDX75553
CDX78273
CDX80321
CDX88676
CDY01754
CDY02848
CDY08909
CDY10078
CDY24091
CDY24829
CDY25849
CDY28576
CDY28577
CDY32528
CDY32673
CDY32674
CDY36901
CDY44976
CDY45117
CDY47053
CDY53183
CDY58069
CDY58070
CDY60212
CDY68276
CDY69707
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54850.1	CDY10078	AT1G04130.1	21798944
AT3G54850.1	CDY32528	AT1G04130.1	21798944
AT3G54850.1	CDY24091	AT1G53510.1	21798944
AT3G54850.1	CDY25849	AT1G53510.1	21798944
AT3G54850.1	CDY45117	AT1G53510.1	21798944
AT3G54850.1	CDY60212	AT1G53510.1	21798944
AT3G54850.1	CDY01754	AT1G69690.1	21798944
AT3G54850.1	CDY28576	AT1G69690.1	21798944
AT3G54850.1	CDY28577	AT1G69690.1	21798944
AT3G54850.1	CDY68276	AT1G69690.1	21798944
AT3G54850.1	CDY36901	AT3G48150.1	21798944
AT3G54850.1	CDY44976	AT3G48150.1	21798944
AT3G54850.1	CDY58069	AT3G48150.1	21798944
AT3G54850.1	CDY58070	AT3G48150.1	21798944
AT3G54850.1	CDY70805	AT3G48150.1	21798944
AT3G54850.1	CDX73439	AT3G54850.1	21798944
AT3G54850.1	CDX78273	AT3G54850.1	21798944
AT3G54850.1	CDX69199	AT4G36110.1	21798944
AT3G54850.1	CDX72576	AT4G36110.1	21798944
AT3G54850.1	CDX75553	AT4G36110.1	21798944
AT3G54850.1	CDY08909	AT4G36110.1	21798944
AT3G54850.1	CDY24829	AT4G36110.1	21798944
AT3G54850.1	CDY47053	AT4G36110.1	21798944
AT3G54850.1	CDX72699	AT4G39470.1	21798944
AT3G54850.1	CDY53183	AT4G39470.1	21798944
AT3G54850.1	CDX71145	AT5G58950.1	21798944
AT3G54850.1	CDX80321	AT5G58950.1	21798944
AT3G54850.1	CDX88676	AT5G58950.1	21798944
AT3G54850.1	CDY02848	AT5G58950.1	21798944
AT3G54850.1	CDY32673	AT5G58950.1	21798944
AT3G54850.1	CDY32674	AT5G58950.1	21798944
AT3G54850.1	CDY69707	AT5G58950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78273	Canola	cytosol	69.15	98.27
AT3G54850.1	Thale cress	cytosol	61.49	87.66
KRH04403	Soybean	mitochondrion	28.52	70.99
Solyc11g008390.1.1	Tomato	cytosol	45.28	65.38
PGSC0003DMT400019235	Potato	cytosol	45.06	65.06
VIT_13s0019g04710.t01	Wine grape	cytosol	45.28	64.97
KRG91959	Soybean	cytosol	45.39	64.82
KRH34817	Soybean	cytosol	45.06	64.24
TraesCS7A01G001900.1	Wheat	cytosol	36.07	61.32
HORVU7Hr1G000780.1	Barley	cytosol	38.29	58.47
EER87680	Sorghum	cytosol	38.96	58.4
TraesCS7D01G001600.2	Wheat	cytosol, plastid	38.51	57.64
Os06t0102700-01	Rice	plasma membrane	38.4	57.28
Zm00001d045632_P004	Maize	cytosol, mitochondrion	38.62	55.24
GSMUA_Achr3P00280_001	Banana	cytosol	36.96	55.22
TraesCS4A01G498700.1	Wheat	plastid	38.07	54.19
GSMUA_Achr1P24290_001	Banana	cytosol	35.29	52.05
CDX68379	Canola	cytosol	36.18	49.54
CDX86080	Canola	cytosol	35.85	49.24
CDX99112	Canola	cytosol	35.74	49.16
CDX68380	Canola	cytosol	28.97	49.06
CDY31736	Canola	cytosol	33.74	47.35
CDX77213	Canola	cytosol	33.63	47.12
CDY25764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	28.3	43.37
CDY28679	Canola	cytosol	12.65	43.35
CDY12497	Canola	cytosol	28.19	42.55
CDY21412	Canola	cytosol, endoplasmic reticulum	28.19	41.78
CDY04746	Canola	cytosol, endoplasmic reticulum	28.19	41.71
CDX96295	Canola	cytosol, plasma membrane	27.86	40.75
CDX72769	Canola	cytosol	26.86	39.54
CDY68037	Canola	cytosol	27.97	38.47
CDX95193	Canola	cytosol	27.75	38.17
CDX91947	Canola	plastid	14.32	36.54
CDY04747	Canola	cytosol, golgi	17.65	36.05
CDX74298	Canola	plastid	14.1	35.88
CDY32692	Canola	peroxisome	13.76	35.13
CDY71737	Canola	cytosol	17.98	35.06
CDX74050	Canola	cytosol	17.65	34.87
CDY28059	Canola	cytosol	17.87	34.85
CDY02828	Canola	cytosol	13.54	34.46
CDY08002	Canola	cytosol	17.2	34.07
CDY68352	Canola	cytosol	16.43	32.46
CDY38506	Canola	cytosol	16.09	31.8
CDX90186	Canola	mitochondrion	24.64	31.14
CDY43332	Canola	mitochondrion	24.53	30.74
CDX76873	Canola	cytosol, plastid	25.42	30.66
CDY48332	Canola	mitochondrion, plastid	23.75	30.4
CDX94661	Canola	plastid	23.86	30.24
CDY18649	Canola	cytosol, plastid	23.53	29.78
CDX90518	Canola	plastid	14.98	29.67
CDX78262	Canola	cytosol	23.09	29.63
CDX81323	Canola	cytosol, plastid	23.64	29.46
CDX99816	Canola	plastid	23.64	29.42
CDX73449	Canola	cytosol	22.97	29.4
CDY09688	Canola	cytosol	14.76	29.3
CDY43686	Canola	plastid	21.31	29.05
CDY02891	Canola	cytosol	23.75	29.04
CDY37666	Canola	cytosol, plastid	21.2	28.9
CDY64696	Canola	cytosol, extracellular, mitochondrion, plastid	23.53	28.73
CDY57440	Canola	cytosol	20.42	27.92
CDY12838	Canola	cytosol	21.64	27.9
CDY38931	Canola	cytosol	18.65	27.32
CDX71307	Canola	cytosol	20.31	27.19
CDY31406	Canola	cytosol	20.31	27.15
CDX70810	Canola	cytosol	12.99	24.79
CDY51235	Canola	extracellular, golgi	13.76	23.89
CDY46092	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	25.75	22.46
CDY55050	Canola	cytosol	16.65	21.55
CDX93411	Canola	mitochondrion	16.54	21.35
CDY24520	Canola	cytosol	15.76	21.07
CDY54132	Canola	cytosol	15.76	20.88
CDY04344	Canola	cytosol	6.22	17.55
CDY04342	Canola	cytosol	6.33	17.12
CDX70805	Canola	cytosol	13.54	7.92
CDY51234	Canola	cytosol	13.43	7.3

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	MapMan:22.8.1.6	Gene3D:3.30.40.10	Gene3D:3.40.50.300	GO:A0A078CB51
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	EnsemblPlants:CDX73439	ProteinID:CDX73439	ProteinID:CDX73439.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0005525	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00108937001	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	InterPro:P-loop_NTPase	PFAM:PF00071	PFAM:PF00514
PFAM:PF04564	PRINTS:PR00449	PFscan:PS50176	PFscan:PS51419	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF111	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF52540	SUPFAM:SSF57850	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	UniPathway:UPA00143	UniParc:UPI0004EEAA9F	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

BnaC08g25640D

Coordinates

chrLK031799:-:356093..364154

Molecular Weight (calculated)

98427.7 Da

IEP (calculated)

5.231

GRAVY (calculated)

-0.124

Length

901 amino acids

Sequence
(BLAST)

001: MGCAASLPGK FSPFHRNSGA LNGLTSSENA APADAKNLRV KLVLLGDSGV GKSCIVLQFV RGQFDATSKV TVGASFLSQT ITLQDSTTVK FEIWDTAGQE
101: RYSALAPLYY RGAGVAVIVY DITSPESFKK AQYWVKELQK HGSPDIVMAL VGNKADLHEK REVPSEDGME LAEKNGMFFI ETSAKTADNI NELFETLFFL
201: FVLATCKNSQ SCQKTEKLER GYLVLLNHHH DWSVWIIPSS AKSLNLSPGL LPPFNNFLLL PLLLRLELSG MGSTNEELMS RLVDSVKQIS KFSNSKGFFG
301: RIQGDLVRRI TLLSPFFEEL IDIGAELNEE QQLTGFEVMM IALDSSLQLF RSVNGGSKLL QIVHRGSVMQ KFHDVTVEIE AALTQIPYDH FEVSEEVIEQ
401: VKLLHSQFKR ATERQEDYDL QLSHDLAVAE SVVDPDPETL KRLSQELQLS TIDELKKESH AIHEYFLSYE GDPDDCFQRM SSLLKKLVDC ASTESSEPDA
501: STGSKVISRH RSPVIPEYFR CPISLELMKD PVIVSTGQTY ERSSIQKWLD AGHKTCPKSQ ETLLHSGLTP NYVLKSLIAL WCESNGIELP QNQGSSYRTT
601: RPGGGSSSSD CDRAFVLALL EKLANGSTEQ QRAAAGELRL LAKRNADNRV CIAEAGAIPL LVELLSSPDP RTQEHSVTAL LNLSINEGNK GAIVDAGAIT
701: DIVEVLKNGS MEARENAAAT LFSLSVVDEN KVAIGAAGAI QALISLLEEG TRRGKKDAAT AIFNLCIYQG NKSRAIKGGI VDPLTRLLKD AGGGMVDEAL
801: AILAILSTNQ EGKAAIAEAD TIPVLVEIIR TGSPRNRENA AAILWYLCIG NMERLNVARE VGADVALKEL TENGTDRAKR KAASLLEIIQ QLEGVAISTV
901: P

Best Arabidopsis Sequence Match ( AT3G54850.1 )
(BLAST)

001: MGLTNCCSHE ELMSRLVDSV KEISGFSSSR GFIGKIQGDL VRRITLLSPF FEELIDVNVE LKKDQITGFE AMRIALDSSL ELFRSVNGGS KLFQLFDRDS
101: LVEKFRDMTV EIEAALSQIP YEKIEVSEEV REQVQLLHFQ FKRAKERWEE SDLQLSHDLA MAENVMDPDP IILKRLSQEL QLTTIDELKK ESHAIHEYFL
201: SYDGDPDDCF ERMSSLLKNL VDFVTMESSD PDPSTGSRIV SRHRSPVIPE YFRCPISLEL MKDPVIVSTG QTYERSSIQK WLDAGHKTCP KSQETLLHAG
301: LTPNYVLKSL IALWCESNGI ELPQNQGSCR TTKIGGSSSS DCDRTFVLSL LEKLANGTTE QQRAAAGELR LLAKRNVDNR VCIAEAGAIP LLVELLSSPD
401: PRTQEHSVTA LLNLSINEGN KGAIVDAGAI TDIVEVLKNG SMEARENAAA TLFSLSVIDE NKVAIGAAGA IQALISLLEE GTRRGKKDAA TAIFNLCIYQ
501: GNKSRAVKGG IVDPLTRLLK DAGGGMVDEA LAILAILSTN QEGKTAIAEA ESIPVLVEII RTGSPRNREN AAAILWYLCI GNIERLNVAR EVGADVALKE
601: LTENGTDRAK RKAASLLELI QQTEGVAVTT VP

Arabidopsis Description

PUB14U-box domain-containing protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.