CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90930
CDX91293
CDX97278
CDY18011
CDY21898
CDY22062

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36110.1	CDX90930	AT4G02590.1	21798944
AT4G36110.1	CDX91293	AT4G02590.1	21798944
AT4G36110.1	CDX97278	AT4G02590.1	21798944
AT4G36110.1	CDY18011	AT4G02590.1	21798944
AT4G36110.1	CDY21898	AT4G02590.1	21798944
AT4G36110.1	CDY22062	AT4G02590.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011662.1-P	Field mustard	mitochondrion, plastid	100.0	100.0
CDX69199	Canola	mitochondrion, plastid	100.0	100.0
CDY08909	Canola	mitochondrion	90.38	90.38
CDY24829	Canola	mitochondrion	90.38	90.38
CDY47053	Canola	mitochondrion, plastid	83.65	87.88
AT4G36110.1	Thale cress	mitochondrion	86.54	86.54
CDX72576	Canola	mitochondrion	81.73	85.86
CDY68553	Canola	cytosol, mitochondrion, nucleus	73.08	70.37
CDY38169	Canola	cytosol, mitochondrion, nucleus	72.12	69.44
CDX72500	Canola	mitochondrion	71.15	69.16
CDX75460	Canola	mitochondrion	71.15	69.16
CDX69086	Canola	mitochondrion	70.19	68.22
CDY70461	Canola	mitochondrion	70.19	68.22
CDY63257	Canola	mitochondrion	70.19	68.22
CDX76303	Canola	mitochondrion	70.19	68.22
CDY54551	Canola	cytosol, mitochondrion, nucleus	70.19	67.59
CDY30334	Canola	cytosol, mitochondrion, nucleus	70.19	67.59
VIT_04s0023g03230.t01	Wine grape	mitochondrion	67.31	67.31
Solyc03g033590.1.1	Tomato	mitochondrion	63.46	66.67
CDX85905	Canola	mitochondrion	68.27	65.74
CDY47511	Canola	mitochondrion	68.27	65.74
CDX68122	Canola	mitochondrion	68.27	65.74
CDX73181	Canola	mitochondrion	68.27	65.74
KRH28787	Soybean	cytosol, mitochondrion	65.38	65.38
KRH08093	Soybean	cytosol	66.35	65.09
PGSC0003DMT400058186	Potato	cytosol	62.5	65.0
CDY41947	Canola	mitochondrion	65.38	64.76
CDY42589	Canola	mitochondrion	65.38	64.76
Solyc02g062230.1.1	Tomato	cytosol, mitochondrion	59.62	64.58
PGSC0003DMT400075050	Potato	cytosol	59.62	64.58
CDY45331	Canola	mitochondrion	66.35	64.49
KRH69796	Soybean	cytosol	66.35	64.49
CDY39041	Canola	mitochondrion	66.35	63.89
CDY13560	Canola	mitochondrion	66.35	63.89
CDX72733	Canola	mitochondrion	63.46	63.46
CDY22408	Canola	mitochondrion	63.46	63.46
PGSC0003DMT400009439	Potato	mitochondrion	59.62	61.39
CDY02251	Canola	mitochondrion	63.46	61.11
CDX89731	Canola	mitochondrion	63.46	61.11
CDX82007	Canola	mitochondrion	60.58	60.58
CDY13831	Canola	mitochondrion	60.58	60.58
Solyc02g084010.1.1	Tomato	mitochondrion	58.65	59.8
CDY44482	Canola	mitochondrion	61.54	56.64
CDY18596	Canola	cytosol, mitochondrion, nucleus	53.85	56.0
CDX81404	Canola	cytosol, mitochondrion, nucleus	52.88	55.0
CDY55152	Canola	cytosol, mitochondrion	57.69	53.1
CDY29398	Canola	cytosol, mitochondrion	55.77	51.33
CDX73741	Canola	cytosol, mitochondrion, nucleus	50.0	50.49
KRH76667	Soybean	cytosol, plastid	64.42	44.37
CDY20904	Canola	cytosol, extracellular	50.0	40.94
CDX90724	Canola	cytosol	30.77	32.65
CDY05061	Canola	cytosol	30.77	32.65
CDY18466	Canola	cytosol, mitochondrion	32.69	28.81
CDX70314	Canola	mitochondrion	28.85	28.04
CDY10388	Canola	mitochondrion	28.85	28.04
CDY46750	Canola	cytosol	31.73	26.61
CDX79712	Canola	cytosol	31.73	26.61
CDX91329	Canola	cytosol	31.73	26.4
CDX74993	Canola	cytosol	31.73	26.4
CDY62892	Canola	mitochondrion	26.92	25.23
CDY44355	Canola	mitochondrion	26.92	25.23
CDY13307	Canola	cytosol	31.73	25.19
CDX67565	Canola	cytosol	31.73	25.19
CDX78160	Canola	cytosol	29.81	23.85
CDX73568	Canola	cytosol	29.81	23.85

Protein Annotations

EnsemblPlants:CDX75553	EnsemblPlantsGene:GSBRNA2T00121455001	GO:A0A078CKI2	GO:GO:0008150	GO:GO:0009719	GO:GO:0009733
InterPro:SAUR_fam	PANTHER:PTHR31374	PANTHER:PTHR31374:SF41	PFAM:PF02519	ProteinID:CDX75553	ProteinID:CDX75553.1
UniParc:UPI0002546BA8	MapMan:35.1	:	:	:	:

Description

BnaA01g01490D

Coordinates

chrLK031804:+:1617701..1618186

Molecular Weight (calculated)

11736.3 Da

IEP (calculated)

9.258

GRAVY (calculated)

-0.171

Length

104 amino acids

Sequence
(BLAST)

001: MAIKKSNKVA ASQAATIKKL LKRCSSLGKK NQGNCYFSDV PKGHFPVYVG QQRSRYVVPI AWLAHPEFQT LLQLAEEEFG FEHEMGLTIP CDEAVFQSLI
101: SMFR

Best Arabidopsis Sequence Match ( AT4G36110.1 )
(BLAST)

001: MAIKKSNKAA LSQAASLKQI LKRCSSLGKK NQGNCYFNDV PKGHFPVYVG QHRSRYVVPI SWLDHHEFQS LLQLAEEEFG FEHEMGLTIP CDEVVFRSLI
101: SMFR

Arabidopsis Description

SAUR9 [Source:UniProtKB/TrEMBL;Acc:A0A178V0P2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.