Factsheet for PGSC0003DMT400009439

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400049768

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36110.1	PGSC0003DMT400049768	AT4G02590.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g084010.1.1	Tomato	mitochondrion	99.01	98.04
PGSC0003DMT400075050	Potato	cytosol	80.2	84.38
PGSC0003DMT400058186	Potato	cytosol	79.21	80.0
KRH28787	Soybean	cytosol, mitochondrion	70.3	68.27
VIT_04s0023g03230.t01	Wine grape	mitochondrion	69.31	67.31
AT4G34760.1	Thale cress	mitochondrion	70.3	66.36
CDY13831	Canola	mitochondrion	67.33	65.38
Bra031171.1-P	Field mustard	mitochondrion	67.33	65.38
CDX82007	Canola	mitochondrion	67.33	65.38
Bra011560.1-P	Field mustard	mitochondrion	68.32	64.49
CDX75460	Canola	mitochondrion	68.32	64.49
AT2G21220.1	Thale cress	mitochondrion	66.34	64.42
Bra034651.1-P	Field mustard	mitochondrion	66.34	64.42
AT4G38860.1	Thale cress	mitochondrion	66.34	63.81
Bra017747.1-P	Field mustard	mitochondrion, plastid	62.38	63.64
CDY47053	Canola	mitochondrion, plastid	62.38	63.64
CDY45331	Canola	mitochondrion	67.33	63.55
Bra017676.1-P	Field mustard	mitochondrion	67.33	63.55
CDX69086	Canola	mitochondrion	67.33	63.55
CDY22408	Canola	mitochondrion	65.35	63.46
CDX72733	Canola	mitochondrion	65.35	63.46
Bra033581.1-P	Field mustard	mitochondrion	65.35	63.46
PGSC0003DMT400004089	Potato	cytosol	63.37	63.37
KRH08093	Soybean	cytosol	66.34	63.21
KRH69796	Soybean	cytosol	66.34	62.62
CDX76303	Canola	mitochondrion	66.34	62.62
CDY70461	Canola	mitochondrion	66.34	62.62
CDY63257	Canola	mitochondrion	66.34	62.62
CDY24829	Canola	mitochondrion	64.36	62.5
Bra010501.1-P	Field mustard	mitochondrion	64.36	62.5
CDY08909	Canola	mitochondrion	64.36	62.5
CDY41947	Canola	mitochondrion	64.36	61.9
PGSC0003DMT400004187	Potato	mitochondrion	64.36	61.9
Bra011889.1-P	Field mustard	mitochondrion	64.36	61.9
CDX72500	Canola	mitochondrion	65.35	61.68
CDX72576	Canola	mitochondrion	60.4	61.62
PGSC0003DMT400068694	Potato	mitochondrion	66.34	61.47
PGSC0003DMT400004186	Potato	mitochondrion	58.42	61.46
CDY42589	Canola	mitochondrion	63.37	60.95
AT4G36110.1	Thale cress	mitochondrion	62.38	60.58
PGSC0003DMT400004165	Potato	mitochondrion	63.37	60.38
PGSC0003DMT400009665	Potato	mitochondrion	64.36	60.19
Bra024482.1-P	Field mustard	mitochondrion	64.36	60.19
AT2G16580.1	Thale cress	mitochondrion	64.36	60.19
CDX75553	Canola	mitochondrion, plastid	61.39	59.62
CDX69199	Canola	mitochondrion, plastid	61.39	59.62
Bra011662.1-P	Field mustard	mitochondrion, plastid	61.39	59.62
CDY54551	Canola	cytosol, mitochondrion, nucleus	63.37	59.26
CDY30334	Canola	cytosol, mitochondrion, nucleus	63.37	59.26
Bra037243.1-P	Field mustard	cytosol, mitochondrion, nucleus	63.37	59.26
PGSC0003DMT400004090	Potato	mitochondrion	61.39	59.05
CDY68553	Canola	cytosol, mitochondrion, nucleus	62.38	58.33
CDY38169	Canola	cytosol, mitochondrion, nucleus	62.38	58.33
Bra039909.1-P	Field mustard	mitochondrion	62.38	58.33
PGSC0003DMT400004167	Potato	mitochondrion	62.38	58.33
AT2G18010.1	Thale cress	cytosol, plastid	64.36	58.04
CDY02251	Canola	mitochondrion	61.39	57.41
CDX89731	Canola	mitochondrion	61.39	57.41
Bra013061.1-P	Field mustard	mitochondrion	61.39	57.41
PGSC0003DMT400087067	Potato	mitochondrion	57.43	52.73
KRH76667	Soybean	cytosol, plastid	69.31	46.36
CDY20904	Canola	cytosol, extracellular	47.52	37.8
PGSC0003DMT400067154	Potato	cytosol	37.62	36.19
PGSC0003DMT400055533	Potato	cytosol	34.65	28.93
PGSC0003DMT400080544	Potato	cytosol	34.65	28.69

Protein Annotations

EnsemblPlants:PGSC0003DMT400009439	EnsemblPlantsGene:PGSC0003DMG400003673	EntrezGene:102586210	GO:GO:0008150	GO:GO:0009719	GO:GO:0009733
InterPro:SAUR_fam	PANTHER:PTHR31374	PANTHER:PTHR31374:SF35	PFAM:PF02519	PGSC:PGSC0003DMG400003673	RefSeq:XP_006340725.1
UniParc:UPI0002954852	UniProt:M0ZW93	MapMan:35.1	:	:	:

Description

Auxin-induced SAUR [Source:PGSC_GENE;Acc:PGSC0003DMG400003673]

Coordinates

chr2:+:39507436..39507824

Molecular Weight (calculated)

11638.0 Da

IEP (calculated)

8.877

GRAVY (calculated)

-0.424

Length

101 amino acids

Sequence
(BLAST)

001: MGLKKTSSSK QQTAALKQLI KRCSSFGKNE NGFPHDVPKG HFVVYVGENR SRYIIPISWL TYPQFQNLLQ RAEEEFGFSH DMGITIPCHE HDFCSLISMF
101: R

Best Arabidopsis Sequence Match ( AT4G34760.1 )
(BLAST)

001: MAIMKKTSKL TQTAMLKQIL KRCSSLGKKN GGGYDEDCLP LDVPKGHFPV YVGENRSRYI VPISFLTHPE FQSLLQRAEE EFGFDHDMGL TIPCDELVFQ
101: TLTSMIR

Arabidopsis Description

SAUR50Auxin-responsive protein SAUR50 [Source:UniProtKB/Swiss-Prot;Acc:O65695]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.