Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400049768 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G36110.1 | PGSC0003DMT400049768 | AT4G02590.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g033590.1.1 | Tomato | mitochondrion | 95.0 | 95.96 |
| PGSC0003DMT400075050 | Potato | cytosol | 83.0 | 86.46 |
| PGSC0003DMT400009439 | Potato | mitochondrion | 80.0 | 79.21 |
| KRH28787 | Soybean | cytosol, mitochondrion | 77.0 | 74.04 |
| VIT_04s0023g03230.t01 | Wine grape | mitochondrion | 77.0 | 74.04 |
| AT2G21220.1 | Thale cress | mitochondrion | 74.0 | 71.15 |
| AT4G34760.1 | Thale cress | mitochondrion | 76.0 | 71.03 |
| CDX75460 | Canola | mitochondrion | 75.0 | 70.09 |
| Bra011560.1-P | Field mustard | mitochondrion | 75.0 | 70.09 |
| KRH08093 | Soybean | cytosol | 74.0 | 69.81 |
| Bra017747.1-P | Field mustard | mitochondrion, plastid | 69.0 | 69.7 |
| CDY47053 | Canola | mitochondrion, plastid | 69.0 | 69.7 |
| PGSC0003DMT400004089 | Potato | cytosol | 70.0 | 69.31 |
| CDY13831 | Canola | mitochondrion | 72.0 | 69.23 |
| CDX82007 | Canola | mitochondrion | 72.0 | 69.23 |
| Bra031171.1-P | Field mustard | mitochondrion | 72.0 | 69.23 |
| Bra034651.1-P | Field mustard | mitochondrion | 72.0 | 69.23 |
| KRH69796 | Soybean | cytosol | 74.0 | 69.16 |
| CDX69086 | Canola | mitochondrion | 74.0 | 69.16 |
| AT4G38860.1 | Thale cress | mitochondrion | 72.0 | 68.57 |
| CDX76303 | Canola | mitochondrion | 73.0 | 68.22 |
| CDX72500 | Canola | mitochondrion | 73.0 | 68.22 |
| CDY45331 | Canola | mitochondrion | 73.0 | 68.22 |
| Bra017676.1-P | Field mustard | mitochondrion | 73.0 | 68.22 |
| CDY63257 | Canola | mitochondrion | 73.0 | 68.22 |
| CDY70461 | Canola | mitochondrion | 73.0 | 68.22 |
| CDX72576 | Canola | mitochondrion | 67.0 | 67.68 |
| CDY08909 | Canola | mitochondrion | 70.0 | 67.31 |
| Bra010501.1-P | Field mustard | mitochondrion | 70.0 | 67.31 |
| CDY24829 | Canola | mitochondrion | 70.0 | 67.31 |
| Bra011889.1-P | Field mustard | mitochondrion | 70.0 | 66.67 |
| CDY41947 | Canola | mitochondrion | 70.0 | 66.67 |
| AT4G36110.1 | Thale cress | mitochondrion | 69.0 | 66.35 |
| CDX72733 | Canola | mitochondrion | 69.0 | 66.35 |
| CDY22408 | Canola | mitochondrion | 69.0 | 66.35 |
| Bra033581.1-P | Field mustard | mitochondrion | 69.0 | 66.35 |
| PGSC0003DMT400009665 | Potato | mitochondrion | 71.0 | 65.74 |
| PGSC0003DMT400004187 | Potato | mitochondrion | 69.0 | 65.71 |
| CDY42589 | Canola | mitochondrion | 69.0 | 65.71 |
| PGSC0003DMT400004186 | Potato | mitochondrion | 63.0 | 65.62 |
| PGSC0003DMT400068694 | Potato | mitochondrion | 71.0 | 65.14 |
| PGSC0003DMT400004090 | Potato | mitochondrion | 67.0 | 63.81 |
| AT2G16580.1 | Thale cress | mitochondrion | 68.0 | 62.96 |
| AT2G18010.1 | Thale cress | cytosol, plastid | 70.0 | 62.5 |
| CDX75553 | Canola | mitochondrion, plastid | 65.0 | 62.5 |
| Bra011662.1-P | Field mustard | mitochondrion, plastid | 65.0 | 62.5 |
| CDX69199 | Canola | mitochondrion, plastid | 65.0 | 62.5 |
| CDX89731 | Canola | mitochondrion | 67.0 | 62.04 |
| PGSC0003DMT400004165 | Potato | mitochondrion | 65.0 | 61.32 |
| Bra013061.1-P | Field mustard | mitochondrion | 66.0 | 61.11 |
| CDY02251 | Canola | mitochondrion | 66.0 | 61.11 |
| PGSC0003DMT400004167 | Potato | mitochondrion | 66.0 | 61.11 |
| Bra024482.1-P | Field mustard | mitochondrion | 66.0 | 61.11 |
| CDY68553 | Canola | cytosol, mitochondrion, nucleus | 65.0 | 60.19 |
| Bra039909.1-P | Field mustard | mitochondrion | 64.0 | 59.26 |
| CDY54551 | Canola | cytosol, mitochondrion, nucleus | 64.0 | 59.26 |
| Bra037243.1-P | Field mustard | cytosol, mitochondrion, nucleus | 64.0 | 59.26 |
| CDY30334 | Canola | cytosol, mitochondrion, nucleus | 64.0 | 59.26 |
| CDY38169 | Canola | cytosol, mitochondrion, nucleus | 64.0 | 59.26 |
| PGSC0003DMT400087067 | Potato | mitochondrion | 61.0 | 55.45 |
| KRH76667 | Soybean | cytosol, plastid | 76.0 | 50.33 |
| CDY20904 | Canola | cytosol, extracellular | 50.0 | 39.37 |
| PGSC0003DMT400067154 | Potato | cytosol | 35.0 | 33.33 |
| PGSC0003DMT400055533 | Potato | cytosol | 38.0 | 31.41 |
| PGSC0003DMT400080544 | Potato | cytosol | 38.0 | 31.15 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400058186 | EnsemblPlantsGene:PGSC0003DMG400022588 | EntrezGene:102590067 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009733 |
| InterPro:SAUR_fam | PANTHER:PTHR31374 | PANTHER:PTHR31374:SF35 | PFAM:PF02519 | PGSC:PGSC0003DMG400022588 | RefSeq:XP_006343372.1 |
| UniParc:UPI000294AED5 | UniProt:M1C279 | MapMan:35.1 | : | : | : |
Description
Auxin-induced SAUR [Source:PGSC_GENE;Acc:PGSC0003DMG400022588]
Coordinates
chr3:+:3708262..3708960
Molecular Weight (calculated)
11447.8 Da
IEP (calculated)
7.127
GRAVY (calculated)
-0.349
Length
100 amino acids
Sequence
(BLAST)
(BLAST)
1: MALKKSSKHI TQSVALKQIL KRCSSFGKNE NGLPHDVPKG HFVVYVGENR SRHIIPISWL THPEFQSLLQ RAEEEFGFNH DMGLTIPCDE EDFCSLMSMF
001: MAIKKSNKAA LSQAASLKQI LKRCSSLGKK NQGNCYFNDV PKGHFPVYVG QHRSRYVVPI SWLDHHEFQS LLQLAEEEFG FEHEMGLTIP CDEVVFRSLI
101: SMFR
101: SMFR
Arabidopsis Description
SAUR9 [Source:UniProtKB/TrEMBL;Acc:A0A178V0P2]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.