Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024482.1-P | Field mustard | mitochondrion | 58.27 | 68.52 |
| CDY30334 | Canola | cytosol, mitochondrion, nucleus | 53.54 | 62.96 |
| CDY54551 | Canola | cytosol, mitochondrion, nucleus | 53.54 | 62.96 |
| CDY68553 | Canola | cytosol, mitochondrion, nucleus | 51.97 | 61.11 |
| AT2G18010.1 | Thale cress | cytosol, plastid | 52.76 | 59.82 |
| CDY38169 | Canola | cytosol, mitochondrion, nucleus | 50.39 | 59.26 |
| Solyc02g062230.1.1 | Tomato | cytosol, mitochondrion | 40.16 | 53.12 |
| PGSC0003DMT400075050 | Potato | cytosol | 39.37 | 52.08 |
| Solyc03g033590.1.1 | Tomato | mitochondrion | 40.16 | 51.52 |
| CDX75553 | Canola | mitochondrion, plastid | 40.94 | 50.0 |
| CDY24829 | Canola | mitochondrion | 40.94 | 50.0 |
| CDY08909 | Canola | mitochondrion | 40.94 | 50.0 |
| PGSC0003DMT400058186 | Potato | cytosol | 39.37 | 50.0 |
| CDX69199 | Canola | mitochondrion, plastid | 40.94 | 50.0 |
| CDY47053 | Canola | mitochondrion, plastid | 38.58 | 49.49 |
| CDX72500 | Canola | mitochondrion | 40.94 | 48.6 |
| CDX72576 | Canola | mitochondrion | 37.8 | 48.48 |
| CDX75460 | Canola | mitochondrion | 40.16 | 47.66 |
| CDX76303 | Canola | mitochondrion | 40.16 | 47.66 |
| CDY70461 | Canola | mitochondrion | 40.16 | 47.66 |
| CDY63257 | Canola | mitochondrion | 40.16 | 47.66 |
| CDY45331 | Canola | mitochondrion | 40.16 | 47.66 |
| PGSC0003DMT400009439 | Potato | mitochondrion | 37.8 | 47.52 |
| CDX89731 | Canola | mitochondrion | 40.16 | 47.22 |
| KRH28787 | Soybean | cytosol, mitochondrion | 38.58 | 47.12 |
| CDX69086 | Canola | mitochondrion | 39.37 | 46.73 |
| CDY02251 | Canola | mitochondrion | 39.37 | 46.3 |
| KRH08093 | Soybean | cytosol | 38.58 | 46.23 |
| VIT_04s0023g03230.t01 | Wine grape | mitochondrion | 37.8 | 46.15 |
| CDY13831 | Canola | mitochondrion | 37.8 | 46.15 |
| CDX82007 | Canola | mitochondrion | 37.8 | 46.15 |
| Solyc02g084010.1.1 | Tomato | mitochondrion | 37.01 | 46.08 |
| KRH69796 | Soybean | cytosol | 38.58 | 45.79 |
| CDY47511 | Canola | mitochondrion | 37.8 | 44.44 |
| CDX72733 | Canola | mitochondrion | 36.22 | 44.23 |
| CDY22408 | Canola | mitochondrion | 36.22 | 44.23 |
| CDY41947 | Canola | mitochondrion | 36.22 | 43.81 |
| CDY13560 | Canola | mitochondrion | 37.01 | 43.52 |
| CDX73181 | Canola | mitochondrion | 37.01 | 43.52 |
| CDX68122 | Canola | mitochondrion | 37.01 | 43.52 |
| CDY39041 | Canola | mitochondrion | 37.01 | 43.52 |
| CDY42589 | Canola | mitochondrion | 35.43 | 42.86 |
| CDX85905 | Canola | mitochondrion | 36.22 | 42.59 |
| CDY18596 | Canola | cytosol, mitochondrion, nucleus | 33.07 | 42.0 |
| CDX81404 | Canola | cytosol, mitochondrion, nucleus | 33.07 | 42.0 |
| CDY44482 | Canola | mitochondrion | 37.01 | 41.59 |
| CDY55152 | Canola | cytosol, mitochondrion | 34.65 | 38.94 |
| CDY29398 | Canola | cytosol, mitochondrion | 33.86 | 38.05 |
| KRH76667 | Soybean | cytosol, plastid | 37.8 | 31.79 |
| CDX73741 | Canola | cytosol, mitochondrion, nucleus | 25.2 | 31.07 |
| CDY05061 | Canola | cytosol | 20.47 | 26.53 |
| CDX90724 | Canola | cytosol | 20.47 | 26.53 |
| CDY18466 | Canola | cytosol, mitochondrion | 23.62 | 25.42 |
| CDX70314 | Canola | mitochondrion | 21.26 | 25.23 |
| CDY44355 | Canola | mitochondrion | 21.26 | 24.32 |
| CDY10388 | Canola | mitochondrion | 20.47 | 24.3 |
| CDY46750 | Canola | cytosol | 23.62 | 24.19 |
| CDX79712 | Canola | cytosol | 23.62 | 24.19 |
| CDY13307 | Canola | cytosol | 24.41 | 23.66 |
| CDY62892 | Canola | mitochondrion | 20.47 | 23.42 |
| CDX74993 | Canola | cytosol | 22.83 | 23.2 |
| CDX91329 | Canola | cytosol | 22.83 | 23.2 |
| CDX67565 | Canola | cytosol | 23.62 | 22.9 |
| CDX73568 | Canola | cytosol | 22.83 | 22.31 |
| CDX78160 | Canola | cytosol | 22.83 | 22.31 |
Protein Annotations
| EnsemblPlants:CDY20904 | EnsemblPlantsGene:GSBRNA2T00013255001 | GO:A0A078G652 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009733 |
| InterPro:SAUR_fam | PANTHER:PTHR31374 | PANTHER:PTHR31374:SF41 | PFAM:PF02519 | ProteinID:CDY20904 | ProteinID:CDY20904.1 |
| SignalP:SignalP-noTM | UniParc:UPI0004EEF09A | UniProt:A0A078G652 | MapMan:35.1 | : | : |
Description
BnaC06g01240DBnaC06g01240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G652]
Coordinates
chrLK032114:+:220507..221122
Molecular Weight (calculated)
14848.8 Da
IEP (calculated)
4.920
GRAVY (calculated)
-0.214
Length
127 amino acids
Sequence
(BLAST)
(BLAST)
001: MHILKLLIII YTSGCYYKQE DGLPQDVPKG HFPVYVGPNR SRYIIPISWL EHSEFQTLLR LAEEEYGFDH NMGVIIPCDE VFFRRGYLYI IKKFEFEVEV
101: GGLGYFFPNV NGQRDMLTSD LEKSSDN
101: GGLGYFFPNV NGQRDMLTSD LEKSSDN
001: MAIKRSSKAT SSQAASIKQI VKRCSSLRKM KNVNGCYYNQ EDDLPQDVPK GHFPVYVGPN RSRYIVPISW LHHSEFQTLL RLAEEEFGFD HDMGLTIPCD
101: EVFFRSLISM FR
101: EVFFRSLISM FR
Arabidopsis Description
Putative auxin-regulated protein [Source:UniProtKB/TrEMBL;Acc:Q9SL45]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.