Factsheet for PGSC0003DMT400075050

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400049768

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36110.1	PGSC0003DMT400049768	AT4G02590.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g062230.1.1	Tomato	cytosol, mitochondrion	95.83	95.83
PGSC0003DMT400058186	Potato	cytosol	86.46	83.0
PGSC0003DMT400009439	Potato	mitochondrion	84.38	80.2
VIT_04s0023g03230.t01	Wine grape	mitochondrion	75.0	69.23
KRH28787	Soybean	cytosol, mitochondrion	73.96	68.27
PGSC0003DMT400004089	Potato	cytosol	70.83	67.33
AT2G21220.1	Thale cress	mitochondrion	72.92	67.31
AT4G34760.1	Thale cress	mitochondrion	75.0	67.29
CDY45331	Canola	mitochondrion	73.96	66.36
Bra017676.1-P	Field mustard	mitochondrion	73.96	66.36
Bra031171.1-P	Field mustard	mitochondrion	71.88	66.35
CDX82007	Canola	mitochondrion	71.88	66.35
CDY13831	Canola	mitochondrion	71.88	66.35
Bra017747.1-P	Field mustard	mitochondrion, plastid	67.71	65.66
CDY47053	Canola	mitochondrion, plastid	67.71	65.66
PGSC0003DMT400004186	Potato	mitochondrion	65.62	65.62
Bra011560.1-P	Field mustard	mitochondrion	72.92	65.42
CDX75460	Canola	mitochondrion	72.92	65.42
Bra034651.1-P	Field mustard	mitochondrion	70.83	65.38
AT4G38860.1	Thale cress	mitochondrion	70.83	64.76
CDX69086	Canola	mitochondrion	71.88	64.49
CDY70461	Canola	mitochondrion	71.88	64.49
CDX76303	Canola	mitochondrion	71.88	64.49
CDY63257	Canola	mitochondrion	71.88	64.49
KRH08093	Soybean	cytosol	70.83	64.15
PGSC0003DMT400004187	Potato	mitochondrion	69.79	63.81
CDX72576	Canola	mitochondrion	65.62	63.64
CDX72500	Canola	mitochondrion	70.83	63.55
KRH69796	Soybean	cytosol	70.83	63.55
CDY08909	Canola	mitochondrion	68.75	63.46
CDY24829	Canola	mitochondrion	68.75	63.46
Bra010501.1-P	Field mustard	mitochondrion	68.75	63.46
CDY41947	Canola	mitochondrion	68.75	62.86
Bra011889.1-P	Field mustard	mitochondrion	68.75	62.86
PGSC0003DMT400004090	Potato	mitochondrion	68.75	62.86
CDX72733	Canola	mitochondrion	67.71	62.5
CDY22408	Canola	mitochondrion	67.71	62.5
Bra033581.1-P	Field mustard	mitochondrion	67.71	62.5
AT4G36110.1	Thale cress	mitochondrion	67.71	62.5
PGSC0003DMT400068694	Potato	mitochondrion	70.83	62.39
CDY42589	Canola	mitochondrion	67.71	61.9
PGSC0003DMT400009665	Potato	mitochondrion	68.75	61.11
PGSC0003DMT400004165	Potato	mitochondrion	66.67	60.38
Bra024482.1-P	Field mustard	mitochondrion	67.71	60.19
CDX75553	Canola	mitochondrion, plastid	64.58	59.62
CDX69199	Canola	mitochondrion, plastid	64.58	59.62
Bra011662.1-P	Field mustard	mitochondrion, plastid	64.58	59.62
AT2G16580.1	Thale cress	mitochondrion	66.67	59.26
CDY68553	Canola	cytosol, mitochondrion, nucleus	65.62	58.33
CDX89731	Canola	mitochondrion	65.62	58.33
PGSC0003DMT400004167	Potato	mitochondrion	65.62	58.33
AT2G18010.1	Thale cress	cytosol, plastid	67.71	58.04
CDY38169	Canola	cytosol, mitochondrion, nucleus	64.58	57.41
CDY02251	Canola	mitochondrion	64.58	57.41
Bra039909.1-P	Field mustard	mitochondrion	64.58	57.41
Bra013061.1-P	Field mustard	mitochondrion	64.58	57.41
CDY54551	Canola	cytosol, mitochondrion, nucleus	63.54	56.48
CDY30334	Canola	cytosol, mitochondrion, nucleus	63.54	56.48
Bra037243.1-P	Field mustard	cytosol, mitochondrion, nucleus	63.54	56.48
PGSC0003DMT400087067	Potato	mitochondrion	62.5	54.55
KRH76667	Soybean	cytosol, plastid	71.88	45.7
CDY20904	Canola	cytosol, extracellular	52.08	39.37
PGSC0003DMT400067154	Potato	cytosol	37.5	34.29
PGSC0003DMT400080544	Potato	cytosol	38.54	30.33
PGSC0003DMT400055533	Potato	cytosol	37.5	29.75

Protein Annotations

EnsemblPlants:PGSC0003DMT400075050	EnsemblPlantsGene:PGSC0003DMG400029190	EntrezGene:102578418	GO:GO:0008150	GO:GO:0009719	GO:GO:0009733
InterPro:SAUR_fam	PANTHER:PTHR31374	PANTHER:PTHR31374:SF35	PFAM:PF02519	PGSC:PGSC0003DMG400029190	RefSeq:XP_006366565.1
UniParc:UPI0002966313	UniProt:M1CUK6	MapMan:35.1	:	:	:

Description

Auxin-induced SAUR [Source:PGSC_GENE;Acc:PGSC0003DMG400029190]

Coordinates

chr2:-:20397675..20398300

Molecular Weight (calculated)

10934.1 Da

IEP (calculated)

7.561

GRAVY (calculated)

-0.324

Length

96 amino acids

Sequence
(BLAST)

1: MALKKATQTA TLKQILKKCS SFGKNENGLP NDVPKGHFVV YVGENRSRYI IPISWLTHPE FQSLLQRAEE EFGFNHDLGI TIPCHEHDFC SLISNF

Best Arabidopsis Sequence Match ( AT2G21220.1 )
(BLAST)

001: MAVKRSSKLT QTAMLKQILK RCSSLAKNQC YDEDGLPVDV PKGHFPVYVG EKRSRYIVPI SFLTHPKFKS LLQQAEEEFG FNHDMGLTIP CEEVVFRSLT
101: SMIG

Arabidopsis Description

Putative auxin-regulated protein [Source:UniProtKB/TrEMBL;Acc:Q9SIG9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.