CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95612
KRH32094
KRH55381
KRH67287

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36110.1	KRG95612	AT4G02590.1	21798944
AT4G36110.1	KRH32094	AT4G02590.1	21798944
AT4G36110.1	KRH55381	AT4G02590.1	21798944
AT4G36110.1	KRH67287	AT4G02590.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08093	Soybean	cytosol	90.38	88.68
KRH69796	Soybean	cytosol	90.38	87.85
VIT_04s0023g03230.t01	Wine grape	mitochondrion	80.77	80.77
Solyc03g033590.1.1	Tomato	mitochondrion	75.96	79.8
PGSC0003DMT400058186	Potato	cytosol	74.04	77.0
Solyc02g062230.1.1	Tomato	cytosol, mitochondrion	70.19	76.04
KRH39815	Soybean	mitochondrion	75.96	75.96
AT4G38860.1	Thale cress	mitochondrion	75.96	75.24
CDY22408	Canola	mitochondrion	75.0	75.0
CDX72733	Canola	mitochondrion	75.0	75.0
Bra033581.1-P	Field mustard	mitochondrion	75.0	75.0
KRH24349	Soybean	mitochondrion	75.0	74.29
PGSC0003DMT400075050	Potato	cytosol	68.27	73.96
CDY41947	Canola	mitochondrion	74.04	73.33
Bra011889.1-P	Field mustard	mitochondrion	74.04	73.33
CDX75460	Canola	mitochondrion	75.0	72.9
Bra011560.1-P	Field mustard	mitochondrion	75.0	72.9
Bra034651.1-P	Field mustard	mitochondrion	72.12	72.12
AT4G34760.1	Thale cress	mitochondrion	74.04	71.96
CDY63257	Canola	mitochondrion	74.04	71.96
CDY70461	Canola	mitochondrion	74.04	71.96
CDX76303	Canola	mitochondrion	74.04	71.96
CDX69086	Canola	mitochondrion	74.04	71.96
KRH51448	Soybean	cytosol	73.08	71.7
KRH60748	Soybean	cytosol	73.08	71.7
CDY42589	Canola	mitochondrion	72.12	71.43
AT2G21220.1	Thale cress	mitochondrion	71.15	71.15
Bra017747.1-P	Field mustard	mitochondrion, plastid	67.31	70.71
CDY47053	Canola	mitochondrion, plastid	67.31	70.71
PGSC0003DMT400009439	Potato	mitochondrion	68.27	70.3
CDX82007	Canola	mitochondrion	70.19	70.19
CDY13831	Canola	mitochondrion	70.19	70.19
Bra031171.1-P	Field mustard	mitochondrion	70.19	70.19
Solyc02g084010.1.1	Tomato	mitochondrion	68.27	69.61
CDY24829	Canola	mitochondrion	69.23	69.23
AT4G36110.1	Thale cress	mitochondrion	69.23	69.23
Bra010501.1-P	Field mustard	mitochondrion	69.23	69.23
CDY08909	Canola	mitochondrion	69.23	69.23
KRH61056	Soybean	mitochondrion	66.35	69.0
KRH51719	Soybean	mitochondrion	66.35	69.0
CDX72576	Canola	mitochondrion	65.38	68.69
Bra017676.1-P	Field mustard	mitochondrion	70.19	68.22
CDY45331	Canola	mitochondrion	70.19	68.22
CDX72500	Canola	mitochondrion	70.19	68.22
AT2G18010.1	Thale cress	cytosol, plastid	72.12	66.96
AT2G16580.1	Thale cress	mitochondrion	69.23	66.67
CDX89731	Canola	mitochondrion	68.27	65.74
KRH76667	Soybean	cytosol, plastid	95.19	65.56
CDX75553	Canola	mitochondrion, plastid	65.38	65.38
Bra011662.1-P	Field mustard	mitochondrion, plastid	65.38	65.38
CDX69199	Canola	mitochondrion, plastid	65.38	65.38
CDY02251	Canola	mitochondrion	67.31	64.81
Bra013061.1-P	Field mustard	mitochondrion	67.31	64.81
CDY68553	Canola	cytosol, mitochondrion, nucleus	66.35	63.89
Bra024482.1-P	Field mustard	mitochondrion	66.35	63.89
CDY38169	Canola	cytosol, mitochondrion, nucleus	65.38	62.96
Bra039909.1-P	Field mustard	mitochondrion	65.38	62.96
CDY54551	Canola	cytosol, mitochondrion, nucleus	64.42	62.04
CDY30334	Canola	cytosol, mitochondrion, nucleus	64.42	62.04
Bra037243.1-P	Field mustard	cytosol, mitochondrion, nucleus	64.42	62.04
KRH54020	Soybean	cytosol	30.77	40.0
KRH63924	Soybean	cytosol	29.81	39.24
CDY20904	Canola	cytosol, extracellular	47.12	38.58
KRH34853	Soybean	mitochondrion	36.54	32.2
KRH19939	Soybean	cytosol	36.54	30.89
KRH67711	Soybean	cytosol	30.77	30.19
KRH32539	Soybean	cytosol	35.58	29.6
KRG91926	Soybean	mitochondrion	33.65	28.0
KRG95997	Soybean	mitochondrion	33.65	28.0

Protein Annotations

EMBL:ACUP02006765	EnsemblPlants:KRH28787	EnsemblPlantsGene:GLYMA_11G076200	EntrezGene:100798840	GO:GO:0008150	GO:GO:0009719
GO:GO:0009733	InterPro:SAUR_fam	PANTHER:PTHR31374	PANTHER:PTHR31374:SF2	PFAM:PF02519	ProteinID:KRH28787
ProteinID:KRH28787.1	UniParc:UPI0001BA6CBC	UniProt:I1LI08	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr11:-:5700637..5701432

Molecular Weight (calculated)

11928.5 Da

IEP (calculated)

8.228

GRAVY (calculated)

-0.316

Length

104 amino acids

Sequence
(BLAST)

001: MAIKKSNKLP QAIVLKQIVK RCSSFGKKQT YNEEGLPDDV PKGHFAVYVG ENRTRYIIPI SWLAHPQFQI LLQRAEEEFG FNHDMGLTIP CDEVAFESLT
101: SMMR

Best Arabidopsis Sequence Match ( AT4G38860.1 )
(BLAST)

001: MAVKRSSKLT QTAMLKQILK RCSSLGKKQC YDEEGLPLDV PKGHFPVYVG EKRTRYIVPI SFLTHPEFLI LLQQAEEEFG FRHDMGGLTI PCEEVVFLSL
101: TSMIR

Arabidopsis Description

At4g38860 [Source:UniProtKB/TrEMBL;Acc:Q9T0J3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.