CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93695
KRG94592
KRH01133
KRH01571
KRH03461
KRH06898
KRH14475
KRH21929
KRH21930
KRH21931
KRH26162
KRH39622
KRH40128
KRH44917
KRH49908
KRH55034
KRH56921
KRH70543
KRH73670
KRH74300

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02590.1	KRH44917	AT1G22630.1	21798944
AT4G02590.1	KRH21929	AT1G78680.1	21798944
AT4G02590.1	KRH21930	AT1G78680.1	21798944
AT4G02590.1	KRH21931	AT1G78680.1	21798944
AT4G02590.1	KRH26162	AT2G24020.1	21798944
AT4G02590.1	KRH55034	AT2G24020.1	21798944
AT4G02590.1	KRH14475	AT2G42870.1	21798944
AT4G02590.1	KRH73670	AT2G42870.1	21798944
AT4G02590.1	KRH01133	AT3G28715.1	21798944
AT4G02590.1	KRH40128	AT3G28715.1	21798944
AT4G02590.1	KRH03461	AT3G47640.1	21798944
AT4G02590.1	KRH56921	AT3G47640.1	21798944
AT4G02590.1	KRH49908	AT4G25315.1	21798944
AT4G02590.1	KRG94592	AT5G14070.1	21798944
AT4G02590.1	KRH01571	AT5G14070.1	21798944
AT4G02590.1	KRH06898	AT5G14070.1	21798944
AT4G02590.1	KRH70543	AT5G14070.1	21798944
AT4G02590.1	KRG93695	AT5G15802.1	21798944
AT4G02590.1	KRH39622	AT5G45620.1	21798944
AT4G02590.1	KRH74300	AT5G45620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95612	Soybean	nucleus	96.58	96.58
KRH71344	Soybean	cytosol	22.95	89.33
KRH32094	Soybean	nucleus	83.22	85.87
KRH71345	Soybean	nucleus	49.32	81.36
Bra036256.1-P	Field mustard	nucleus	61.64	78.95
KRH55381	Soybean	cytosol	18.49	78.26
VIT_07s0141g00220.t01	Wine grape	nucleus	76.71	77.51
PGSC0003DMT400049768	Potato	nucleus	75.0	72.52
Solyc09g065820.2.1	Tomato	nucleus	75.0	72.52
Os07t0182200-01	Rice	cytosol	33.22	71.32
Bra018539.1-P	Field mustard	nucleus	61.3	70.47
CDY21898	Canola	nucleus	72.26	70.1
CDX91293	Canola	nucleus	71.23	69.8
CDY22062	Canola	nucleus	72.6	69.74
AT4G02590.1	Thale cress	nucleus	73.97	69.68
CDY18143	Canola	nucleus	71.23	67.97
CDY18011	Canola	nucleus	70.21	67.43
CDX97278	Canola	nucleus	68.84	67.22
CDX89919	Canola	nucleus	71.23	66.88
Bra033368.1-P	Field mustard	nucleus	71.23	66.88
CDX90930	Canola	nucleus	70.55	66.45
Bra000872.1-P	Field mustard	nucleus	69.86	66.02
AT1G03040.3	Thale cress	nucleus	70.21	61.56
GSMUA_Achr5P03100_001	Banana	nucleus	54.11	57.66
GSMUA_Achr4P21070_001	Banana	nucleus	58.9	57.33
OQU88567	Sorghum	nucleus	53.08	55.96
Os03t0797600-01	Rice	nucleus	55.82	55.44
Zm00001d018967_P001	Maize	nucleus	54.11	55.44
Zm00001d013073_P002	Maize	nucleus	53.77	55.09
KXG37359	Sorghum	nucleus	53.42	54.93
TraesCS5D01G449200.1	Wheat	nucleus	52.05	54.09
TraesCS5B01G445900.1	Wheat	nucleus	52.05	54.09
TraesCS5A01G441900.1	Wheat	nucleus	49.32	51.25
KRG92679	Soybean	nucleus	57.19	50.3
KRH34087	Soybean	nucleus	55.82	49.7
KRH72281	Soybean	nucleus, plastid	20.89	48.8
GSMUA_Achr9P25560_001	Banana	nucleus	57.53	47.59
HORVU5Hr1G106310.3	Barley	nucleus	50.68	47.44
KRH03075	Soybean	nucleus	44.52	35.42
KRH12909	Soybean	nucleus	48.29	29.68
KRH37912	Soybean	nucleus	47.95	28.57
KRH71636	Soybean	golgi, plasma membrane, vacuole	14.38	27.45
KRH04711	Soybean	plastid	11.3	20.62
KRH76132	Soybean	nucleus	12.33	19.67
KRH05665	Soybean	nucleus	15.41	15.15
KRH15381	Soybean	nucleus	15.41	15.15
KRH69138	Soybean	cytosol, nucleus, vacuole	9.25	15.0
KRH28453	Soybean	nucleus	14.38	14.43
KRH04595	Soybean	nucleus	13.36	14.34
KRH32290	Soybean	nucleus	20.55	12.22
KRH67519	Soybean	nucleus	19.86	11.55
KRH77016	Soybean	nucleus	14.73	11.47
KRH19683	Soybean	nucleus	19.86	11.39
KRH65412	Soybean	nucleus	14.73	10.83
KRH33663	Soybean	nucleus	15.07	9.8
KRH68348	Soybean	nucleus	17.12	9.67
KRH54630	Soybean	nucleus	12.67	9.2
KRH45975	Soybean	nucleus	16.44	9.14
KRH73584	Soybean	nucleus	17.12	8.9
KRG88937	Soybean	nucleus	14.04	8.82
KRG99030	Soybean	nucleus	16.44	8.78
KRH14535	Soybean	nucleus	16.78	8.72
KRG96615	Soybean	nucleus	15.41	8.69
KRH75301	Soybean	nucleus	13.36	8.52
KRH33733	Soybean	nucleus	18.49	7.81
KRG90443	Soybean	nucleus	18.84	7.62
KRH68390	Soybean	nucleus	14.73	6.89
KRG96663	Soybean	nucleus	14.73	6.79
KRH05051	Soybean	nucleus	3.77	2.75

Protein Annotations

EntrezGene:100808932	MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:ACUP02002049	EnsemblPlantsGene:GLYMA_03G158500	GO:GO:0001046
GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	UniProt:I1JNY9	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlants:KRH67287
ProteinID:KRH67287	ProteinID:KRH67287.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF15
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000233A4AA	InterPro:bHLH_dom	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:37375105..37378985

Molecular Weight (calculated)

31393.4 Da

IEP (calculated)

6.897

GRAVY (calculated)

-0.328

Length

292 amino acids

Sequence
(BLAST)

001: MANNPSDAPA DDFLEQILGL PTFASADSGL SAADVGLAGA ATQSPMMLQL SSADANAHLA GASFHAPVYQ LGLSLEQGKG RFMKPDEASA SGKRFRDDVV
101: DNRAKHVFHG QPMPTTMPAA PHPPAIRPRV RARRGQATDP HSIAERLRRE RIAERIRALQ ELVPSVNKTD RAAMLDEIVD YVKFLRLQVK VLSMSRLGGA
201: GAVAPLVTDI PLSSVEEEGG EGARNRPAWD KWSNDGTERQ VAKLMEENVG AAMQFLQSKA LCIMPISLAS AIYQSQPPDT SSIVKHETSP PS

Best Arabidopsis Sequence Match ( AT4G02590.2 )
(BLAST)

001: MASNNPHDNL SDQTPSDDFF EQILGLPNFS ASSAAGLSGV DGGLGGGAPP MMLQLGSGEE GSHMGGLGGS GPTGFHNQMF PLGLSLDQGK GPGFLRPEGG
101: HGSGKRFSDD VVDNRCSSMK PVFHGQPMQQ PPPSAPHQPT SIRPRVRARR GQATDPHSIA ERLRRERIAE RIRALQELVP TVNKTDRAAM IDEIVDYVKF
201: LRLQVKVLSM SRLGGAGAVA PLVTDMPLSS SVEDETGEGG RTPQPAWEKW SNDGTERQVA KLMEENVGAA MQLLQSKALC MMPISLAMAI YHSQPPDTSS
301: VVKPENNPPQ

Arabidopsis Description

UNE12Transcription factor UNE12 [Source:UniProtKB/Swiss-Prot;Acc:O22768]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.