CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96615
KRG99030
KRH03090
KRH14535
KRH19683
KRH32290
KRH33663
KRH45975
KRH54632
KRH56866
KRH63271
KRH67519
KRH68348
KRH69138
KRH71636
KRH73584

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20180.2	KRH19683	AT2G20180.2	21928113
AT2G20180.2	KRH32290	AT2G20180.2	21928113
AT2G20180.2	KRH67519	AT2G20180.2	21928113
AT2G20180.2	KRH71636	AT2G20180.2	21928113
AT2G20180.2	KRG99030	AT3G59060.2	21928113
AT2G20180.2	KRH14535	AT3G59060.2	21928113
AT2G20180.2	KRH45975	AT3G59060.2	21928113
AT2G20180.2	KRH73584	AT3G59060.2	21928113
AT2G20180.2	KRG96615	AT3G62090.2	21928113
AT2G20180.2	KRH33663	AT3G62090.2	21928113
AT2G20180.2	KRH68348	AT3G62090.2	21928113
AT2G20180.2	KRH69138	AT3G62090.2	21928113
AT2G20180.2	KRH03090	AT5G61270.1	21928113
AT2G20180.2	KRH54632	AT5G61270.1	21928113
AT2G20180.2	KRH56866	AT5G61270.1	21928113
AT2G20180.2	KRH63271	AT5G61270.1	21928113

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71636	Soybean	golgi, plasma membrane, vacuole	20.92	68.63
KRH32290	Soybean	nucleus	63.35	64.77
KRH19683	Soybean	nucleus	65.54	64.64
Solyc09g063010.2.1	Tomato	nucleus	55.38	49.91
PGSC0003DMT400048756	Potato	nucleus	55.18	47.92
GSMUA_Achr1P16830_001	Banana	extracellular	22.31	43.58
AT2G20180.2	Thale cress	nucleus	40.84	42.89
CDY31989	Canola	nucleus	39.24	41.39
CDY05725	Canola	nucleus	39.44	39.05
KRH04711	Soybean	plastid	11.95	37.5
KRH76132	Soybean	nucleus	12.75	34.97
KRH72281	Soybean	nucleus, plastid	7.97	32.0
KRH55381	Soybean	cytosol	3.98	28.99
KRH04595	Soybean	nucleus	15.54	28.68
KRH69138	Soybean	cytosol, nucleus, vacuole	10.16	28.33
KRH45975	Soybean	nucleus	28.69	27.43
KRH05665	Soybean	nucleus	15.94	26.94
KRG99030	Soybean	nucleus	29.08	26.69
KRH28453	Soybean	nucleus	15.14	26.12
KRH15381	Soybean	nucleus	15.34	25.93
KRH73584	Soybean	nucleus	28.49	25.44
KRH14535	Soybean	nucleus	28.49	25.44
KRH54630	Soybean	nucleus	19.52	24.38
KRH77016	Soybean	nucleus	17.53	23.47
KRH71345	Soybean	nucleus	8.17	23.16
KRH33663	Soybean	nucleus	20.32	22.72
KRG88937	Soybean	nucleus	20.92	22.58
KRH75301	Soybean	nucleus	20.52	22.49
KRH32094	Soybean	nucleus	11.95	21.2
KRH33733	Soybean	nucleus	28.49	20.69
KRH68348	Soybean	nucleus	21.12	20.5
KRG90443	Soybean	nucleus	29.48	20.5
KRG95612	Soybean	nucleus	11.75	20.21
KRH65412	Soybean	nucleus	15.74	19.9
KRH67287	Soybean	nucleus	11.55	19.86
KRG96615	Soybean	nucleus	20.32	19.69
KRG92679	Soybean	nucleus	12.55	18.98
KRH34087	Soybean	nucleus	12.35	18.9
KRH03075	Soybean	nucleus	13.74	18.8
KRH68390	Soybean	nucleus	23.31	18.75
KRG96663	Soybean	nucleus	23.51	18.64
KRH71344	Soybean	cytosol	2.39	16.0
KRH12909	Soybean	nucleus	14.54	15.37
KRH37912	Soybean	nucleus	14.74	15.1
KRH05051	Soybean	nucleus	11.95	15.0

Protein Annotations

MapMan:15.5.32	MapMan:26.1.1.4	Gene3D:4.10.280.10	EMBL:ACUP02002065	ncoils:Coil	EnsemblPlantsGene:GLYMA_03G170300
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:K7KFM1	EnsemblPlants:KRH67519	ProteinID:KRH67519	ProteinID:KRH67519.1	ProteinID:KRH67520.1
ProteinID:KRH67521.1	EMBL:KT031102	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF194
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002960A0D	InterPro:bHLH_dom	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:38522022..38528885

Molecular Weight (calculated)

55042.9 Da

IEP (calculated)

6.238

GRAVY (calculated)

-0.684

Length

502 amino acids

Sequence
(BLAST)

001: MDHDHEYPIL TPSALPRQKK PSIADDDIME LLWHNGQVVV QSQNQRSLRK LPPVTNSHDA SPAGPSMTRE IRPLVENFNQ HLFMHEGEMA SWLHYPIDDD
101: EPALDQSFGA DFLYSPPTTA NNSSFMQTLG HTSQLTELRP MSANPRPPIP PPRRPEQRTP NFAYFSRHNT RAAEPSVKAA ARESTVVDSC DTEAAASRVS
201: ETVRSAAEGG AGVAAPSTSA GGGRSTMMYD LTMTSSPGGS SSCDEPVQVA AAEEDRKRKG REAEEWECQS EDVDFESEAK KQVCGSTSTK RSRAAEVHNL
301: SERRRRDRIN EKMKALQELI PRCNKSDKAS MLDEAISYLK SLQLQVQMMS MGCGMVPVMF PGIQQYMPAM GMGVGMGMGM EMGMNRPVMP FPNMLPGSAL
401: PAATAAAAHL GPRFSMPPFH MPHVPAPDSS RMQAANQSDN NMVTSAGPPD PNQSRIPNFT DPYQQYLGPH QMQFQLIQNQ AMNQPNVSKP SNNGGPANPE
501: NH

Best Arabidopsis Sequence Match ( AT2G20180.4 )
(BLAST)

001: MHHFVPDFDT DDDYVNNHNS SLNHLPRKSI TTMGEDDDLM ELLWQNGQVV VQNQRLHTKK PSSSPPKLLP SMDPQQQPSS DQNLFIQEDE MTSWLHYPLR
101: DDDFCSDLLF SAAPTATATA TVSQVTAARP PVSSTNESRP PVRNFMNFSR LRGDFNNGRG GESGPLLSKA VVRESTQVSP SATPSAAASE SGLTRRTDGT
201: DSSAVAGGGA YNRKGKAVAM TAPAIEITGT SSSVVSKSEI EPEKTNVDDR KRKEREATTT DETESRSEET KQARVSTTST KRSRAAEVHN LSERKRRDRI
301: NERMKALQEL IPRCNKSDKA SMLDEAIEYM KSLQLQIQMM SMGCGMMPMM YPGMQQYMPH MAMGMGMNQP IPPPSFMPFP NMLAAQRPLP TQTHMAGSGP
401: QYPVHASDPS RVFVPNQQYD PTSGQPQYPA GYTDPYQQFR GLHPTQPPQF QNQATSYPSS SRVSSSKESE DHGNHTTG

Arabidopsis Description

PIF1Transcription factor PIF1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.