Factsheet for Solyc09g063010.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 30362122

gfp PMID: 30362122 doi

G Gramegna, D Rosado, AP Sánchez Carranza, AB Cruz, M Simon-Moya, B Llorente, M Rodríguez-Concepcíon, L Freschi, M Rossi

Centre for Research in Agricultural Genomics, CSIC-IRTA-UAB-UB, Campus UAB Bellaterra, 08193, Barcelona, Spain., CSIRO Synthetic Biology Future Science Platform, 3004, Melbourne, Australia., Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, São Paulo, 05508-900, SP, Brazil., Department of Molecular Sciences, Macquarie University, 2109, New South Wales, Australia.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g102300.2.1
Solyc06g008030.2.1
Solyc06g069590.2.1
Solyc07g043580.2.1
Solyc09g063010.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20180.2	Solyc06g008030.2.1	AT2G20180.2	21928113
AT2G20180.2	Solyc09g063010.2.1	AT2G20180.2	21928113
AT2G20180.2	Solyc07g043580.2.1	AT3G59060.2	21928113
AT2G20180.2	Solyc01g102300.2.1	AT3G62090.2	21928113
AT2G20180.2	Solyc06g069590.2.1	AT5G61270.1	21928113

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048756	Potato	nucleus	93.0	89.62
KRH71636	Soybean	golgi, plasma membrane, vacuole	17.77	64.71
Solyc06g008030.2.1	Tomato	nucleus	54.76	59.57
VIT_07s0005g05100.t01	Wine grape	mitochondrion, nucleus	46.32	55.84
KRH67519	Soybean	nucleus	49.91	55.38
KRH19683	Soybean	nucleus	49.37	54.03
KRH32290	Soybean	nucleus	46.86	53.16
AT2G20180.2	Thale cress	nucleus	41.83	48.74
CDY31989	Canola	nucleus	38.78	45.38
CDY05725	Canola	nucleus	39.86	43.79
Solyc04g007430.1.1	Tomato	nucleus	9.34	28.26
Solyc07g043580.2.1	Tomato	nucleus	24.78	27.88
Solyc01g090790.2.1	Tomato	nucleus	20.29	24.35
Solyc04g078690.2.1	Tomato	nucleus	13.64	24.2
Solyc02g093280.2.1	Tomato	nucleus	16.16	23.81
Solyc03g115540.1.1	Tomato	nucleus	17.77	22.55
Solyc01g102300.2.1	Tomato	nucleus	27.65	21.54
Solyc10g018510.1.1	Tomato	nucleus	14.54	20.72
Solyc03g005350.2.1	Tomato	nucleus	10.77	20.27
Solyc06g069600.1.1	Tomato	nucleus	14.9	20.05
Solyc09g083220.2.1	Tomato	nucleus	10.59	19.41
Solyc12g010170.1.1	Tomato	nucleus	12.57	18.09
Solyc09g065820.2.1	Tomato	nucleus	9.69	17.88
Solyc07g005400.2.1	Tomato	nucleus	13.64	17.27

Protein Annotations

MapMan:15.5.32	MapMan:26.1.1.4	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:K4CU32
PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF194	SMART:SM00353	SUPFAM:SSF47459
EnsemblPlantsGene:Solyc09g063010.2	EnsemblPlants:Solyc09g063010.2.1	UniParc:UPI000276BD58	InterPro:bHLH_dom	SEG:seg	:

Description

No Description!

Coordinates

chr9:-:60928454..60938553

Molecular Weight (calculated)

60265.0 Da

IEP (calculated)

6.386

GRAVY (calculated)

-0.689

Length

557 amino acids

Sequence
(BLAST)

001: MNHSVPDFDM DDDFSLPASS GITRTKKSAM AEEEIMELLW QNGQVVMQSQ NQRSLKKPHI GNGSGGGGDA VIPSDQAVSR EIRHVEETTP HHLFMQEDEM
101: ASWLHYPLDD PSFERDLYSD LLYPTPTSTF TTAALPRENR TSTFEIRPPP PQPSPAAPIG TAPRPPIPPS RRTVTENSNR FQNFGHFSRL PKARLEPGQA
201: NLSKSPRDST VVDSNVTPIT GQESRVTLIP DNVVAVPGGN VGCSTVNGST GTATASTAIR EPTTTCDISM TSSPGGSGNS VSASAEPPAP APAPSHKGAA
301: PTATAAADDR KRKGREMEDE GQNEDAEFES PDTKKQARGS TSTKRSRAAE VHNLSERRRR DRINEKMKAL QELIPRCNKT DKASMLDEAI EYLKSLQLQV
401: QMMSMGCGMV PMMYPGMQPY MPPMGMGMGM GMGMDIGMNR PMVPYPPLLP GTAMQNAAAA AQMGPRFSIP QFHLPPVPVP DPSRMQASSQ PDPMLNSLVS
501: HNSNQPRLPN FSDPYQQFFG LQQAQVALPQ NQAVEQPSNS KSGSSKEVGN PGNHQSG

Best Arabidopsis Sequence Match ( AT2G20180.4 )
(BLAST)

001: MHHFVPDFDT DDDYVNNHNS SLNHLPRKSI TTMGEDDDLM ELLWQNGQVV VQNQRLHTKK PSSSPPKLLP SMDPQQQPSS DQNLFIQEDE MTSWLHYPLR
101: DDDFCSDLLF SAAPTATATA TVSQVTAARP PVSSTNESRP PVRNFMNFSR LRGDFNNGRG GESGPLLSKA VVRESTQVSP SATPSAAASE SGLTRRTDGT
201: DSSAVAGGGA YNRKGKAVAM TAPAIEITGT SSSVVSKSEI EPEKTNVDDR KRKEREATTT DETESRSEET KQARVSTTST KRSRAAEVHN LSERKRRDRI
301: NERMKALQEL IPRCNKSDKA SMLDEAIEYM KSLQLQIQMM SMGCGMMPMM YPGMQQYMPH MAMGMGMNQP IPPPSFMPFP NMLAAQRPLP TQTHMAGSGP
401: QYPVHASDPS RVFVPNQQYD PTSGQPQYPA GYTDPYQQFR GLHPTQPPQF QNQATSYPSS SRVSSSKESE DHGNHTTG

Arabidopsis Description

PIF1Transcription factor PIF1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.