Factsheet for Solyc12g010170.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020244	Potato	nucleus	96.9	98.17
Solyc07g005400.2.1	Tomato	nucleus	70.03	61.59
VIT_11s0037g00040.t01	Wine grape	nucleus	68.73	52.78
KRH12909	Soybean	nucleus	62.53	50.95
KRH37912	Soybean	nucleus	62.53	49.39
GSMUA_Achr4P01910_001	Banana	nucleus	52.2	44.99
Solyc09g083220.2.1	Tomato	nucleus	33.59	42.76
Solyc03g005350.2.1	Tomato	nucleus	32.56	42.57
Solyc09g065820.2.1	Tomato	nucleus	33.07	42.38
GSMUA_Achr3P04630_001	Banana	nucleus	52.71	41.8
Solyc04g007430.1.1	Tomato	nucleus	11.37	23.91
Solyc02g093280.2.1	Tomato	nucleus	15.25	15.61
Solyc04g078690.2.1	Tomato	nucleus	12.14	14.97
Solyc06g008030.2.1	Tomato	nucleus	17.57	13.28
Solyc07g043580.2.1	Tomato	nucleus	16.28	12.73
Solyc09g063010.2.1	Tomato	nucleus	18.09	12.57
Solyc01g090790.2.1	Tomato	nucleus	14.99	12.5
Solyc03g115540.1.1	Tomato	nucleus	13.44	11.85
Solyc10g018510.1.1	Tomato	nucleus	11.37	11.25
Solyc06g069600.1.1	Tomato	nucleus	11.11	10.39
Solyc01g102300.2.1	Tomato	nucleus	17.83	9.65

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	GO:GO:0001046	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:K4DCA4	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF28
SMART:SM00353	SUPFAM:SSF47459	EnsemblPlantsGene:Solyc12g010170.1	EnsemblPlants:Solyc12g010170.1.1	UniParc:UPI0002769CD8	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:-:3285767..3293079

Molecular Weight (calculated)

40053.6 Da

IEP (calculated)

6.572

GRAVY (calculated)

-0.448

Length

387 amino acids

Sequence
(BLAST)

001: MQAMNSFQST GENGASSGEH MSHSHFDPSS SHDDFLQQIL SSVPSSSPWP EISGDGHPYN FDDHQSTLLA SKLRQHQING GTSAAAAAKA LMLQQQLLLS
101: RGIAGNGGSG INGDQNDDGL NSGNDISVQA LYNGFAGSLG QTSNQSQHFH HSQAQSFGAP AASLSMNQTP AASGSAGGAQ PKQQKVRARR GQATDPHSIA
201: ERLRRERIAE RMKSLQELVP NANKTDKASM LDEIIDYVRF LQLQVKVLSM SRLGGAAAVA PLVADRSSEG GGDCVQGNVG RGGSNGTTSS ANNDSSMTMT
301: EHQVAKLMEE DMGSAMQYLQ GKGLCLMPIS LATAISTSTC HSMKPNNPLL LAGGSAINGV GETGGGPSSP TLSASTVQSA TMGNGGT

Best Arabidopsis Sequence Match ( AT2G24260.1 )
(BLAST)

001: MMNSSLLTPS SSSSSHIQTP STTFDHEDFL DQIFSSAPWP SVVDDAHPLP SDGFHGHDVD SRNQPIMMMP LNDGSSVHAL YNGFSVAGSL PNFQIPQGSG
101: GGLMNQQGQT QTQTQPQASA STATGGTVAA PPQSRTKIRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNGNKTDKA SMLDEIIDYV KFLQLQVKVL
201: SMSRLGGAAS VSSQISEAGG SHGNASSAMV GGSQTAGNSN DSVTMTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTATCHSRN PLIPGAVADV
301: GGPSPPNLSG MTIQSTSTKM GSGNGKLNGN GVTERSSSIA VKEAVSVSKA

Arabidopsis Description

BHLH66Transcription factor bHLH66 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.