Factsheet for GSMUA_Achr3P04630_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P01910_001	Banana	nucleus	67.21	73.05
GSMUA_Achr10P...	Banana	nucleus	52.05	57.73
PGSC0003DMT400020244	Potato	nucleus	42.62	54.45
GSMUA_Achr10P...	Banana	nucleus	44.47	54.25
GSMUA_Achr5P16470_001	Banana	nucleus	50.41	54.07
Solyc12g010170.1.1	Tomato	nucleus	41.8	52.71
PGSC0003DMT400028917	Potato	nucleus	47.75	52.48
Solyc07g005400.2.1	Tomato	nucleus	46.31	51.36
KRH37912	Soybean	nucleus	49.8	49.59
KRH12909	Soybean	nucleus	47.95	49.26
GSMUA_Achr9P11300_001	Banana	nucleus	6.35	49.21
VIT_11s0037g00040.t01	Wine grape	nucleus	50.61	49.01
GSMUA_Achr5P03100_001	Banana	nucleus	26.43	47.08
GSMUA_Achr4P21070_001	Banana	nucleus	27.25	44.33
GSMUA_Achr9P25560_001	Banana	nucleus	27.87	38.53
GSMUA_Achr9P18080_001	Banana	nucleus	27.25	27.42
GSMUA_Achr3P10120_001	Banana	nucleus	28.89	25.87
GSMUA_Achr1P16830_001	Banana	extracellular	10.25	19.46
GSMUA_Achr6P31370_001	Banana	nucleus	13.52	17.74
GSMUA_Achr6P30080_001	Banana	nucleus	13.52	16.46
GSMUA_Achr10P...	Banana	plastid	10.86	15.45
GSMUA_Achr8P15670_001	Banana	nucleus	11.07	15.3
GSMUA_Achr5P02280_001	Banana	nucleus	14.34	12.87
GSMUA_Achr5P18390_001	Banana	nucleus	15.57	12.54
GSMUA_Achr4P31770_001	Banana	nucleus	15.16	12.48
GSMUA_Achr1P19000_001	Banana	mitochondrion, nucleus	13.93	11.47
GSMUA_Achr7P20810_001	Banana	nucleus	12.91	10.52

Protein Annotations

EnsemblPlants:GSMUA_Achr3P04630_001	EnsemblPlants:GSMUA_Achr3T04630_001	EnsemblPlantsGene:GSMUA_Achr3G04630_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR16223	PANTHER:PTHR16223:SF28	PFAM:PF00010	PFscan:PS50888	SEG:seg
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000295C393	UniProt:M0SBT1	MapMan:15.5.32	:

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G04630_001]

Coordinates

chr3:-:2986470..2989899

Molecular Weight (calculated)

49444.1 Da

IEP (calculated)

6.511

GRAVY (calculated)

-0.278

Length

488 amino acids

Sequence
(BLAST)

001: MQPSSREMQG MAGSMNGGIS HSVAVAQIAL RELQNGHGGR QIPNSGPQAS FDDGASGHDD FLDQMLSSLP SSWAELGNLK NPWDPPEAGQ RIFGAGLAGE
101: TSPEEPSAAA AEGMRYPPYD ESSLLANRLR QHQISGGSSP NGKAMMVHLD HQSQQQMLLP SLGRSPVASG DSGLLSLPLT LGTGGYDVDA PFKSLNPTGG
201: EGLFNGLGGP LHRAQSAFGH PQHQGGASMP SQNFTAAAAT GGVGQAASAS ASASASASAG GGTGPPRQKV RARRGQATDP HSIAERLRRE RIADRMKALQ
301: ELVPNANKTD KASMLDEIID YVKFLQLQVK ASSPSLVLSM SRLGGAAAVA PLVADMSSEG QSGAGSGGAN SSGDTLTVTE HQVAKLMEED MGSAMQYLQG
401: KGLCLMPISL ASAISTATAC PPRPLSSSSL SSAGACHLGH GILPGGPHLP SPSGDAPASP GVSALTAQSA MANGAAEAAK EAVTVSKA

Best Arabidopsis Sequence Match ( AT2G24260.2 )
(BLAST)

001: MNQQGQTQTQ TQPQASASTA TGGTVAAPPQ SRTKIRARRG QATDPHSIAE RLRRERIAER MKALQELVPN GNKTDKASML DEIIDYVKFL QLQVKVLSMS
101: RLGGAASVSS QISEAGGSHG NASSAMVGGS QTAGNSNDSV TMTEHQVAKL MEEDMGSAMQ YLQGKGLCLM PISLATAIST ATCHSRNPLI PGAVADVGGP
201: SPPNLSGMTI QSTSTKMGSG NGKLNGNGVT ERSSSIAVKE AVSVSKA

Arabidopsis Description

BHLH66Transcription factor bHLH66 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.