Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P18080_001 | Banana | nucleus | 70.09 | 78.76 |
| GSMUA_Achr9P11300_001 | Banana | nucleus | 5.5 | 47.62 |
| Os06t0193400-01 | Rice | nucleus | 41.65 | 47.49 |
| TraesCS7D01G158300.1 | Wheat | nucleus | 40.55 | 46.04 |
| TraesCS7B01G062100.2 | Wheat | nucleus | 40.18 | 45.62 |
| TraesCS7A01G157700.1 | Wheat | nucleus | 40.0 | 45.42 |
| HORVU7Hr1G032420.3 | Barley | nucleus | 39.82 | 45.11 |
| KXG19523 | Sorghum | nucleus | 39.82 | 44.11 |
| Zm00001d045046_P001 | Maize | nucleus | 38.9 | 44.07 |
| Bra020398.1-P | Field mustard | nucleus | 21.28 | 41.43 |
| Zm00001d037098_P003 | Maize | nucleus | 39.27 | 41.07 |
| CDY11836 | Canola | nucleus | 20.92 | 39.86 |
| Bra002679.1-P | Field mustard | nucleus | 21.1 | 39.79 |
| CDY55014 | Canola | nucleus | 21.1 | 39.79 |
| CDY02785 | Canola | nucleus | 21.28 | 39.19 |
| VIT_11s0016g00380.t01 | Wine grape | nucleus | 38.35 | 38.99 |
| CDY32733 | Canola | nucleus | 21.47 | 38.74 |
| AT5G58010.1 | Thale cress | nucleus | 20.92 | 38.38 |
| Bra006788.1-P | Field mustard | nucleus | 21.1 | 38.33 |
| CDX88653 | Canola | nucleus | 21.1 | 38.33 |
| CDY62262 | Canola | nucleus | 21.1 | 38.08 |
| Zm00001d016873_P001 | Maize | nucleus | 33.76 | 37.63 |
| KXG30460 | Sorghum | nucleus | 34.86 | 37.55 |
| GSMUA_Achr5P03100_001 | Banana | nucleus | 18.35 | 36.5 |
| Os02t0564700-01 | Rice | nucleus | 35.05 | 36.45 |
| GSMUA_Achr4P21070_001 | Banana | nucleus | 18.9 | 34.33 |
| GSMUA_Achr4P01910_001 | Banana | nucleus | 25.5 | 30.96 |
| GSMUA_Achr9P25560_001 | Banana | nucleus | 19.08 | 29.46 |
| GSMUA_Achr10P... | Banana | nucleus | 23.67 | 29.32 |
| GSMUA_Achr3P04630_001 | Banana | nucleus | 25.87 | 28.89 |
| GSMUA_Achr5P16470_001 | Banana | nucleus | 23.85 | 28.57 |
| GSMUA_Achr10P... | Banana | nucleus | 20.92 | 28.5 |
| GSMUA_Achr1P16830_001 | Banana | extracellular | 8.07 | 17.12 |
| GSMUA_Achr6P31370_001 | Banana | nucleus | 10.09 | 14.78 |
| GSMUA_Achr10P... | Banana | plastid | 9.17 | 14.58 |
| GSMUA_Achr8P15670_001 | Banana | nucleus | 8.81 | 13.6 |
| GSMUA_Achr6P30080_001 | Banana | nucleus | 9.54 | 12.97 |
| GSMUA_Achr5P02280_001 | Banana | nucleus | 11.56 | 11.58 |
| GSMUA_Achr1P19000_001 | Banana | mitochondrion, nucleus | 11.74 | 10.79 |
| GSMUA_Achr5P18390_001 | Banana | nucleus | 11.01 | 9.9 |
| GSMUA_Achr4P31770_001 | Banana | nucleus | 10.28 | 9.44 |
| GSMUA_Achr7P20810_001 | Banana | nucleus | 10.09 | 9.18 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P10120_001 | EnsemblPlants:GSMUA_Achr3T10120_001 | EnsemblPlantsGene:GSMUA_Achr3G10120_001 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR16223 | PANTHER:PTHR16223:SF62 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI00029624EB | UniProt:M0SDC9 | MapMan:15.5.32 | : | : |
Description
PTF1, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G10120_001]
Coordinates
chr3:-:7342676..7347017
Molecular Weight (calculated)
58377.2 Da
IEP (calculated)
6.559
GRAVY (calculated)
-0.456
Length
545 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDLIDSFMS SPAWSDRNAS SKASWNGTSV SHTNGLLADS TEPYGEAKNP SVCMVPSSNI IGNAAAEDLN VHGHDGTPSM FIDGSVNYGI LKDLYSGERL
101: SHQNLHNQTS NSISMNNGTR VRTFPLLGVT GSNQTSASFE SALPRGTLAI SSSIESNSSE LSAFPQSLGD AHSINSVPTI WPSSYSSVSS FVGHGNSPAF
201: GYQGNENNDY VLGKLSLENG KFHVDRLPAE SVHAKNQNEI RDFSSFSVGQ HMNLIAGALL PQKEQNGLHS PSFPSGSCMM AVNKMAGIQT PQQLSPSSER
301: HTASHQINNT SSTPSLAVSA NASGCNGTAK PRARARRGQA TDPHSIAERL RREKIAERMK NLQELVPSSN KTDKASMLDE IIDYVKFLQL QVKVLSMSRL
401: GATGAVVPLL TDTQTEVSGS LLLSSSAGQG SSDISESEDS LAFEQEVVKL METNVTTAMQ YLQNKGLCLM PIALATAISN QKGFSTAIPP DRRKPIMSHG
501: MAPLSHSSMD RNCNKNDVTG CNGTIVKQEA RESNDKTREL DHEAK
101: SHQNLHNQTS NSISMNNGTR VRTFPLLGVT GSNQTSASFE SALPRGTLAI SSSIESNSSE LSAFPQSLGD AHSINSVPTI WPSSYSSVSS FVGHGNSPAF
201: GYQGNENNDY VLGKLSLENG KFHVDRLPAE SVHAKNQNEI RDFSSFSVGQ HMNLIAGALL PQKEQNGLHS PSFPSGSCMM AVNKMAGIQT PQQLSPSSER
301: HTASHQINNT SSTPSLAVSA NASGCNGTAK PRARARRGQA TDPHSIAERL RREKIAERMK NLQELVPSSN KTDKASMLDE IIDYVKFLQL QVKVLSMSRL
401: GATGAVVPLL TDTQTEVSGS LLLSSSAGQG SSDISESEDS LAFEQEVVKL METNVTTAMQ YLQNKGLCLM PIALATAISN QKGFSTAIPP DRRKPIMSHG
501: MAPLSHSSMD RNCNKNDVTG CNGTIVKQEA RESNDKTREL DHEAK
001: MENGNGEGKG EFINQNNDFF LDSMSMLSSL PPCWDPSLPP PPPPPQSLFH ALAVDAPFPD QFHHPQESGG PTMGSQEGLQ PQGTVSTTSA PVVRQKPRVR
101: ARRGQATDPH SIAERLRRER IAERMKSLQE LVPNTNKTDK ASMLDEIIEY VRFLQLQVKV LSMSRLGGAG SVGPRLNGLS AEAGGRLNAL TAPCNGLNGN
201: GNATGSSNES LRSTEQRVAK LMEEDMGSAM QYLQGKGLCL MPISLATAIS SSTTHSRGSL FNPISSAVAA EDSNVTATAV AAPEASSTMD DVSASKA
101: ARRGQATDPH SIAERLRRER IAERMKSLQE LVPNTNKTDK ASMLDEIIEY VRFLQLQVKV LSMSRLGGAG SVGPRLNGLS AEAGGRLNAL TAPCNGLNGN
201: GNATGSSNES LRSTEQRVAK LMEEDMGSAM QYLQGKGLCL MPISLATAIS SSTTHSRGSL FNPISSAVAA EDSNVTATAV AAPEASSTMD DVSASKA
Arabidopsis Description
BHLH82LRL3 [Source:UniProtKB/TrEMBL;Acc:A0A178UI77]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.