Factsheet for GSMUA_Achr5P16470_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	55.16	62.75
GSMUA_Achr4P01910_001	Banana	nucleus	54.73	55.46
KRH72281	Soybean	nucleus, plastid	15.16	55.2
GSMUA_Achr10P...	Banana	nucleus	51.43	53.18
Zm00001d020490_P001	Maize	nucleus	38.24	50.58
GSMUA_Achr3P04630_001	Banana	nucleus	54.07	50.41
GSMUA_Achr9P11300_001	Banana	nucleus	6.81	49.21
TraesCS5A01G225700.1	Wheat	nucleus	48.57	48.25
TraesCS5B01G224200.1	Wheat	nucleus	48.57	47.53
Os06t0184000-00	Rice	nucleus	41.54	47.49
TraesCS5D01G233000.1	Wheat	nucleus	48.79	47.44
GSMUA_Achr5P03100_001	Banana	nucleus	27.91	46.35
CDY46132	Canola	endoplasmic reticulum	17.8	46.02
CDY20290	Canola	endoplasmic reticulum, extracellular	20.44	45.81
GSMUA_Achr4P21070_001	Banana	nucleus	29.67	45.0
EER89334	Sorghum	nucleus	43.52	44.3
GSMUA_Achr9P25560_001	Banana	nucleus	29.01	37.39
CDY46133	Canola	nucleus	15.38	36.65
GSMUA_Achr9P18080_001	Banana	nucleus	26.81	25.15
GSMUA_Achr3P10120_001	Banana	nucleus	28.57	23.85
GSMUA_Achr1P16830_001	Banana	extracellular	10.99	19.46
GSMUA_Achr6P31370_001	Banana	nucleus	13.85	16.94
GSMUA_Achr10P...	Banana	plastid	11.43	15.16
GSMUA_Achr6P30080_001	Banana	nucleus	13.19	14.96
GSMUA_Achr8P15670_001	Banana	nucleus	11.21	14.45
GSMUA_Achr1P19000_001	Banana	mitochondrion, nucleus	16.04	12.31
GSMUA_Achr5P18390_001	Banana	nucleus	15.6	11.72
GSMUA_Achr5P02280_001	Banana	nucleus	13.85	11.58
GSMUA_Achr4P31770_001	Banana	nucleus	14.51	11.13
GSMUA_Achr7P20810_001	Banana	nucleus	13.41	10.18

Protein Annotations

EnsemblPlants:GSMUA_Achr5P16470_001	EnsemblPlants:GSMUA_Achr5T16470_001	EnsemblPlantsGene:GSMUA_Achr5G16470_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR16223	PANTHER:PTHR16223:SF28	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002962642	UniProt:M0SZ26	MapMan:15.5.32	:	:

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G16470_001]

Coordinates

chr5:-:14959625..14962987

Molecular Weight (calculated)

47010.7 Da

IEP (calculated)

6.796

GRAVY (calculated)

-0.279

Length

455 amino acids

Sequence
(BLAST)

001: MQRSGKDVQG MAAPHVALQE LQNGGGGAGR DDFFDQMISG LAPAWPPGLG DPKLLFGAGV GGKAPEVASA AEGVRYVPYD ESSLLASRLR QQEASRGGGS
101: LTETSMLLQL GQHSHHQAQQ QLLLQSIAQP PAAGGGDSRG FLPLPLSLGS GGSGDSGLLV DRSRDEVDAP FKSPHLTEAE GLYSNGFGGS LQRAIQAPTQ
201: QQLLHHPQNY GMGQGTRTGT AAASAPACGV TAPPRPRVRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNGNKTDKA LMLDEIIDYV KFLQLQVKAK
301: TSLPPYNASK VLSMSRLGGA AAVAPLVADM SSEVFNGAAV DGVVGGDDGS MTVAEHQVAK LMEEDMGSAM QYLQGKGLCL IPISLVSAIS SAAACHPRPP
401: GSGCLGQLNR PTHHAAGDAP ASPTISALTV QSTNGSGTEA DAPWPAGSKD GAAIP

Best Arabidopsis Sequence Match ( AT2G24260.2 )
(BLAST)

001: MNQQGQTQTQ TQPQASASTA TGGTVAAPPQ SRTKIRARRG QATDPHSIAE RLRRERIAER MKALQELVPN GNKTDKASML DEIIDYVKFL QLQVKVLSMS
101: RLGGAASVSS QISEAGGSHG NASSAMVGGS QTAGNSNDSV TMTEHQVAKL MEEDMGSAMQ YLQGKGLCLM PISLATAIST ATCHSRNPLI PGAVADVGGP
201: SPPNLSGMTI QSTSTKMGSG NGKLNGNGVT ERSSSIAVKE AVSVSKA

Arabidopsis Description

BHLH66Transcription factor bHLH66 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.