Factsheet for Os06t0184000-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G149400.1	Wheat	nucleus	72.36	72.0
TraesCS7A01G147500.1	Wheat	nucleus	71.86	71.86
EER89334	Sorghum	nucleus	74.62	66.44
KRH72281	Soybean	nucleus, plastid	18.34	58.4
Os07t0182200-01	Rice	cytosol	18.09	52.94
CDY20290	Canola	endoplasmic reticulum, extracellular	22.11	43.35
Os03t0797600-01	Rice	nucleus	31.66	42.86
Zm00001d020490_P001	Maize	nucleus	36.43	42.15
CDY46132	Canola	endoplasmic reticulum	18.59	42.05
TraesCS5B01G224200.1	Wheat	nucleus	48.99	41.94
Os02t0795800-00	Rice	endoplasmic reticulum, mitochondrion, nucleus, plastid	29.4	41.79
GSMUA_Achr5P16470_001	Banana	nucleus	47.49	41.54
CDY46133	Canola	nucleus	17.34	36.13
Os06t0193400-01	Rice	nucleus	29.65	24.69
Os02t0564700-01	Rice	nucleus	32.16	24.43
Os04t0618600-01	Rice	nucleus	10.8	23.76
Os06t0164400-01	Rice	cytosol, mitochondrion, nucleus	11.06	22.34
Os02t0805250-00	Rice	nucleus	11.56	16.43
Os12t0610200-01	Rice	nucleus	17.34	15.51
Os03t0782500-01	Rice	nucleus	15.83	15.37
Os07t0143200-01	Rice	nucleus	14.82	14.25
Os05t0139100-01	Rice	nucleus	17.34	13.66
Os10t0556200-01	Rice	nucleus	15.08	12.9
Os01t0286100-01	Rice	nucleus	18.09	11.3
Os03t0639300-01	Rice	nucleus	5.28	6.84

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A0P0WTJ8	ProteinID:BAS96491.1	GO:GO:0001046	GO:GO:0001228
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006366
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0045944	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlantsGene:Os06g0184000
EnsemblPlants:Os06t0184000-00	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF28	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000393980A	InterPro:bHLH_dom	SEG:seg	:	:

Description

ROOTHAIRLESS1Similar to BHLH transcription factor. (Os06t0184000-00)

Coordinates

chr6:-:4192207..4194418

Molecular Weight (calculated)

39750.6 Da

IEP (calculated)

6.106

GRAVY (calculated)

-0.376

Length

398 amino acids

Sequence
(BLAST)

001: MQPSSRDTVA GGGGEGTQDD FFDQMLSTLP SAWADLGGGG GGAAGKSPWE VDPAAAAAAS QVFDESALLA SRLRHHQIGG AGGGGGEKPV MLQLSELHRQ
101: AGGGEEDGSG AFSPLPLFTD RTNVPPREEM EGGFKSPNAA AGGEHALFNG FGVHGGSGGA GQPPFGQGGS MSGQSFGGPA ASGGTAPVTS SGGGGTAPPR
201: QQRVRARRGQ ATDPHSIAER LRRERIAERM KSLQELVPNA NKTDKASMLD EIIDYVKFLQ LQVKVLSMSR LGGAAGMAPL VASMSSEGGG GGGGGGGGGT
301: GGGMRVTEQQ VAKMMEEDMG TAMQYLQGKG LCLMPISLAS AISSATSSAS LLSRPSIRHA GAPPQTMLDA AGPTSPAAMS NGDDPRHAKA DGGAGGTQ

Best Arabidopsis Sequence Match ( AT2G24260.1 )
(BLAST)

001: MMNSSLLTPS SSSSSHIQTP STTFDHEDFL DQIFSSAPWP SVVDDAHPLP SDGFHGHDVD SRNQPIMMMP LNDGSSVHAL YNGFSVAGSL PNFQIPQGSG
101: GGLMNQQGQT QTQTQPQASA STATGGTVAA PPQSRTKIRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNGNKTDKA SMLDEIIDYV KFLQLQVKVL
201: SMSRLGGAAS VSSQISEAGG SHGNASSAMV GGSQTAGNSN DSVTMTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTATCHSRN PLIPGAVADV
301: GGPSPPNLSG MTIQSTSTKM GSGNGKLNGN GVTERSSSIA VKEAVSVSKA

Arabidopsis Description

BHLH66Transcription factor bHLH66 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.