Factsheet for TraesCS5B01G224200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G233000.1	Wheat	nucleus	96.56	95.94
TraesCS5A01G225700.1	Wheat	nucleus	93.98	95.41
Zm00001d020490_P001	Maize	nucleus	51.18	69.19
KRH72281	Soybean	nucleus, plastid	16.13	60.0
CDY20290	Canola	endoplasmic reticulum, extracellular	23.44	53.69
CDY46132	Canola	endoplasmic reticulum	20.0	52.84
TraesCS6B01G391100.1	Wheat	nucleus	40.43	52.37
TraesCS5B01G445900.1	Wheat	nucleus	29.89	49.47
Os06t0184000-00	Rice	nucleus	41.94	48.99
GSMUA_Achr5P16470_001	Banana	nucleus	47.53	48.57
EER89334	Sorghum	nucleus	44.95	46.76
CDY46133	Canola	nucleus	16.13	39.27
TraesCS7B01G062100.2	Wheat	nucleus	27.96	27.08
TraesCS2B01G483300.1	Wheat	nucleus	10.32	25.53
TraesCS6B01G411300.1	Wheat	nucleus	11.83	18.15
TraesCS5B01G054800.2	Wheat	nucleus	12.04	16.52
TraesCS2B01G273500.1	Wheat	nucleus	12.47	16.2
TraesCS7B01G026300.1	Wheat	nucleus	11.4	15.63
TraesCS5B01G422000.1	Wheat	nucleus	13.12	14.88
TraesCS5B01G380200.1	Wheat	nucleus	13.55	14.09
TraesCS1B01G100400.2	Wheat	nucleus	14.19	13.15
TraesCS1B01G226200.2	Wheat	nucleus	12.04	12.31

Protein Annotations

EnsemblPlants:TraesCS5B01G224200.1	EnsemblPlantsGene:TraesCS5B01G224200	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR16223
PANTHER:PTHR16223:SF28	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	MapMan:15.5.32	:	:	:	:

Description

No Description!

Coordinates

chr5B:+:399297770..399301054

Molecular Weight (calculated)

47047.8 Da

IEP (calculated)

6.798

GRAVY (calculated)

-0.309

Length

465 amino acids

Sequence
(BLAST)

001: MQPTTREMQA MAAAGQISLD DLRSGHAGVN NGGAGGVHDD FLDQMFGSLP PSAWHDLAAG TKPEDGAQAD GMQQQLFGGP YDDSMMLASR LRQHQISGGP
101: GGGAASAKQM VLRQLADLRQ GHHNNMLLQG MGRSPSIGGG GGEGGLLLPL TLGNGGSGGD VQALLKAAAN SAGGDAGVFG GFAGSLQQQQ HFQPHPQQQT
201: APMPSQTFGG VGGAPGGGAQ PQQQAGGGGG GGAPAPPRQR VRARRGQATD PHSIAERLRR ERIAERMKAL QELVPNANKW LQTDKASMLD EIIDYVKFLQ
301: LQVKTSMPTH TQVLSMSRLG GAAAVAPLVA DMSSEGRGGA AGGAADGSDG LTVTEQQVAK LMEEDMGAAM QYLQGKGLCL MPVSLASAIS SATCQLRPPA
401: AAAGGPFTAA QHMSAAMRMS VGDGGVPASP SMSVLTAQSA MANGGACAND GEGSHPKDAA SVSKP

Best Arabidopsis Sequence Match ( AT2G24260.2 )
(BLAST)

001: MNQQGQTQTQ TQPQASASTA TGGTVAAPPQ SRTKIRARRG QATDPHSIAE RLRRERIAER MKALQELVPN GNKTDKASML DEIIDYVKFL QLQVKVLSMS
101: RLGGAASVSS QISEAGGSHG NASSAMVGGS QTAGNSNDSV TMTEHQVAKL MEEDMGSAMQ YLQGKGLCLM PISLATAIST ATCHSRNPLI PGAVADVGGP
201: SPPNLSGMTI QSTSTKMGSG NGKLNGNGVT ERSSSIAVKE AVSVSKA

Arabidopsis Description

BHLH66Transcription factor bHLH66 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.