Factsheet for TraesCS5B01G054800.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G049600.1	Wheat	nucleus	88.2	88.99
TraesCS5D01G060300.1	Wheat	nucleus	87.02	84.29
HORVU5Hr1G011780.1	Barley	nucleus	81.42	80.94
Os12t0610200-01	Rice	nucleus	53.69	40.9
Zm00001d031044_P001	Maize	nucleus	43.07	36.59
KXG23955	Sorghum	nucleus	50.44	36.0
TraesCS5B01G380200.1	Wheat	nucleus	45.13	34.23
TraesCS2B01G483300.1	Wheat	nucleus	15.04	27.13
GSMUA_Achr6P31370_001	Banana	nucleus	27.73	25.27
GSMUA_Achr6P30080_001	Banana	nucleus	29.5	24.94
TraesCS2B01G273500.1	Wheat	nucleus	25.37	24.02
GSMUA_Achr5P02280_001	Banana	nucleus	35.99	22.43
TraesCS5B01G422000.1	Wheat	nucleus	26.55	21.95
TraesCS6B01G411300.1	Wheat	nucleus	18.58	20.79
GSMUA_Achr4P31770_001	Banana	nucleus	33.33	19.06
TraesCS7B01G026300.1	Wheat	nucleus	17.99	17.99
TraesCS1B01G100400.2	Wheat	nucleus	25.07	16.93
TraesCS5B01G445900.1	Wheat	nucleus	13.27	16.01
TraesCS6B01G391100.1	Wheat	nucleus	15.63	14.76
TraesCS1B01G226200.2	Wheat	nucleus	18.88	14.07
TraesCS5B01G224200.1	Wheat	nucleus	16.52	12.04
TraesCS7B01G062100.2	Wheat	nucleus	13.86	9.79

Protein Annotations

EnsemblPlants:TraesCS5B01G054800.2	EnsemblPlantsGene:TraesCS5B01G054800	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF194	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	MapMan:15.5.32	MapMan:26.1.1.4	:	:	:

Description

No Description!

Coordinates

chr5B:-:59926405..59927738

Molecular Weight (calculated)

36955.8 Da

IEP (calculated)

7.090

GRAVY (calculated)

-0.521

Length

339 amino acids

Sequence
(BLAST)

001: MNQFVPADWT GNMGDALPPL SSEDDGLVEL LWCSGHVVMQ SQAPPRQAVP EQEAAPWFQY PFVDEDNCSV ERDLFSEIFG RMPADGAGRP CKEDDKQRSA
101: ADAVTALRSG VMPPPLLAGK AGLHGGGPRG SPVSEAGESS VVTMAFRRPC GGSNQAQTPH VSDTARDDTV LLPRSGREAR DARSYLSVSA TLTSSSTWSR
201: PSGTSKRKLS EVPSEVMQDV ESDSADVTCE TARKPTTAKR RRAAQVHNLS ERRRRDRINE KMRALQELVP HCNKTDKASM LDEAIEYLKS LQLQLQLMWA
301: MGGRMALAPA PVMFPAGAHQ YMQRMAAISS RMPPFTTGV

Best Arabidopsis Sequence Match ( AT2G20180.8 )
(BLAST)

001: MHHFVPDFDT DDDYVNNHNS SLNHLPRKSI TTMGEDDDLM ELLWQNGQVV VQNQRLHTKK PSSSPPKLLP SMDPQQQPSS DQNLFIQEDE MTSWLHYPLR
101: DDDFCSDLLF SAAPTATATA TVSQVTAARP PVSSTNESRP PVRNFMNFSR LRGDFNNGRG GESGPLLSKA VVRESTQVSP SATPSAAASE SGLTRRTDGT
201: DSSAVAGGGA YNRKGKAVAM TAPAIEITGT SSSVVSKSEI EPEKTNVDDR KRKEREATTT DETESRSEET KQARVSTTST KRSRAAEVHN LSERKRRDRI
301: NERMKALQEL IPRCNKSDKA SMLDEAIEYM KSLQLQIQVH FL

Arabidopsis Description

PIF1Transcription factor PIF1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.