Factsheet for TraesCS5D01G060300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G049600.1	Wheat	nucleus	86.0	89.58
TraesCS5B01G054800.2	Wheat	nucleus	84.29	87.02
HORVU5Hr1G011780.1	Barley	nucleus	79.71	81.82
Os12t0610200-01	Rice	nucleus	51.71	40.67
Zm00001d031044_P001	Maize	nucleus	43.43	38.1
KXG23955	Sorghum	nucleus	48.0	35.37
TraesCS2D01G461900.1	Wheat	nucleus	14.29	31.85
TraesCS5D01G386500.1	Wheat	nucleus	45.71	31.01
TraesCS2D01G461700.3	Wheat	nucleus	14.57	27.13
GSMUA_Achr6P31370_001	Banana	nucleus	26.57	25.0
GSMUA_Achr6P30080_001	Banana	nucleus	28.29	24.69
TraesCS5D01G428400.2	Wheat	nucleus	26.57	22.25
GSMUA_Achr5P02280_001	Banana	nucleus	34.0	21.88
TraesCS6D01G357700.1	Wheat	nucleus	18.29	21.55
TraesCS2D01G254400.3	Wheat	nucleus	24.29	19.77
GSMUA_Achr4P31770_001	Banana	nucleus	32.86	19.39
TraesCS7D01G124700.1	Wheat	nucleus	18.0	18.64
TraesCS1D01G084200.1	Wheat	nucleus	24.29	16.93
TraesCS5D01G449200.1	Wheat	nucleus	13.14	16.37
TraesCS6D01G341200.1	Wheat	nucleus	15.43	15.08
TraesCS1D01G215600.2	Wheat	nucleus	19.14	14.73
TraesCS7D01G149400.1	Wheat	nucleus	15.71	13.75
TraesCS5D01G233000.1	Wheat	nucleus	15.71	11.75
TraesCS7D01G158300.1	Wheat	nucleus	13.14	9.58

Protein Annotations

EnsemblPlants:TraesCS5D01G060300.1	EnsemblPlantsGene:TraesCS5D01G060300	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF194	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	MapMan:15.5.32	MapMan:26.1.1.4	:	:	:

Description

No Description!

Coordinates

chr5D:-:56950936..56953125

Molecular Weight (calculated)

37959.6 Da

IEP (calculated)

6.182

GRAVY (calculated)

-0.579

Length

350 amino acids

Sequence
(BLAST)

001: MNQFVPADWS GNMGDALPAL SGEDDGLVEL LWCGGHVVMQ SRAPPRPAVR EQEAAPWFQY TVVDEDDYSV ERDLFSEIFD GMPADGAGRP CKEEDKQRGA
101: ADAVTALRSG VMPPPLLTGK AGLHGDGPRV SLASEAGESS VVTIGSRRVG GGGNQAQTAH VSDAAGDDSV PLPLIRNRKE ARDSRSYHSA SATLTSSSTW
201: SRPSGTSKRK QSEGPSEVMQ DVESNSADVT CETAQKPTTA KRRRAAQVHN LSERRRRDRI NEKMRALQEL VPHCNKTDKA SMLDEAIEYL KSLQLQLQLM
301: WAMGGRMTLA PAPVMFPAGA HQYMQRMAAI SSRMPPFTTC AYSSNDPELS

Best Arabidopsis Sequence Match ( AT1G09530.1 )
(BLAST)

001: MPLFELFRLT KAKLESAQDR NPSPPVDEVV ELVWENGQIS TQSQSSRSRN IPPPQANSSR AREIGNGSKT TMVDEIPMSV PSLMTGLSQD DDFVPWLNHH
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS

Arabidopsis Description

PIF3Transcription factor PIF3 [Source:UniProtKB/Swiss-Prot;Acc:O80536]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.