Factsheet for TraesCS7D01G124700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G237500.1
TraesCS5B01G235200.1
TraesCS5D01G244000.1
TraesCS6A01G142000.1
TraesCS7A01G262600.1
TraesCS7A01G323000.1
TraesCS7B01G160500.1
TraesCS7B01G223900.1
TraesCS7D01G263400.1
TraesCS7D01G319600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36930.1	TraesCS5A01G237500.1	AT3G50330.1	17855426
AT4G36930.1	TraesCS5B01G235200.1	AT3G50330.1	17855426
AT4G36930.1	TraesCS5D01G244000.1	AT3G50330.1	17855426
AT4G36930.1	TraesCS6A01G142000.1	AT3G50330.1	17855426
AT4G36930.1	TraesCS7A01G262600.1	AT3G50330.1	17855426
AT4G36930.1	TraesCS7B01G160500.1	AT3G50330.1	17855426
AT4G36930.1	TraesCS7D01G263400.1	AT3G50330.1	17855426
AT4G36930.1	TraesCS7A01G323000.1	AT5G09750.1	17855426
AT4G36930.1	TraesCS7B01G223900.1	AT5G09750.1	17855426
AT4G36930.1	TraesCS7D01G319600.1	AT5G09750.1	17855426
AT4G36930.1	TraesCS5A01G237500.1	AT5G67060.1	17855426
AT4G36930.1	TraesCS5B01G235200.1	AT5G67060.1	17855426
AT4G36930.1	TraesCS5D01G244000.1	AT5G67060.1	17855426
AT4G36930.1	TraesCS6A01G142000.1	AT5G67060.1	17855426
AT4G36930.1	TraesCS7A01G262600.1	AT5G67060.1	17855426
AT4G36930.1	TraesCS7B01G160500.1	AT5G67060.1	17855426
AT4G36930.1	TraesCS7D01G263400.1	AT5G67060.1	17855426

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G126900.1	Wheat	nucleus	93.79	95.77
TraesCS7B01G026300.1	Wheat	nucleus	94.08	93.81
HORVU7Hr1G026560.2	Barley	nucleus	93.79	93.79
OQU75890	Sorghum	nucleus	60.95	70.79
TraesCS6A01G190600.1	Wheat	nucleus	25.44	66.67
Os06t0164400-01	Rice	cytosol, mitochondrion, nucleus	35.8	61.42
Zm00001d045212_P001	Maize	nucleus	58.88	58.7
CDY37185	Canola	mitochondrion	16.86	58.16
KRH04595	Soybean	nucleus	28.99	36.03
KRH04711	Soybean	plastid	16.86	35.62
CDY24734	Canola	plastid	14.5	34.51
KRH28453	Soybean	nucleus	28.99	33.68
Bra012133.1-P	Field mustard	nucleus, plastid	21.01	33.18
CDY12804	Canola	nucleus, plastid	21.01	32.87
CDY01438	Canola	nucleus, plastid	21.01	32.57
AT5G67110.1	Thale cress	nucleus	20.12	32.38
Solyc04g078690.2.1	Tomato	nucleus	29.59	31.85
PGSC0003DMT400020534	Potato	nucleus	29.29	31.53
KRH05665	Soybean	nucleus	26.92	30.64
TraesCS6D01G357700.1	Wheat	nucleus	26.63	30.3
CDY44048	Canola	nucleus, plastid	30.47	30.21
Bra010591.1-P	Field mustard	nucleus, plastid	30.47	30.21
VIT_07s0031g00450.t01	Wine grape	nucleus, plastid	34.91	29.95
KRH15381	Soybean	nucleus	26.04	29.63
TraesCS2D01G461900.1	Wheat	nucleus	13.61	29.3
CDY22448	Canola	nucleus, plastid	30.18	28.98
VIT_18s0001g10270.t01	Wine grape	nucleus	31.36	28.73
KRH77016	Soybean	nucleus	31.66	28.53
CDX75629	Canola	nucleus	28.4	27.75
TraesCS2D01G461700.3	Wheat	nucleus	15.38	27.66
AT4G36930.1	Thale cress	nucleus	30.47	27.61
Bra011740.1-P	Field mustard	nucleus, plastid	28.7	27.4
CDX69281	Canola	nucleus, plastid	27.81	26.93
PGSC0003DMT400010253	Potato	nucleus	29.29	26.33
Solyc02g093280.2.1	Tomato	nucleus	29.29	26.19
TraesCS5D01G060300.1	Wheat	nucleus	18.64	18.0
TraesCS5D01G428400.2	Wheat	nucleus	19.82	16.03
TraesCS6D01G341200.1	Wheat	nucleus	16.86	15.92
GSMUA_Achr7P20810_001	Banana	nucleus	27.81	15.69
TraesCS5D01G449200.1	Wheat	nucleus	13.02	15.66
TraesCS2D01G254400.3	Wheat	nucleus	19.23	15.12
TraesCS5D01G386500.1	Wheat	nucleus	21.6	14.15
TraesCS1D01G215600.2	Wheat	nucleus	18.93	14.07
TraesCS7D01G149400.1	Wheat	nucleus	16.27	13.75
TraesCS1D01G084200.1	Wheat	nucleus	19.23	12.95
TraesCS5D01G233000.1	Wheat	nucleus	16.57	11.97
TraesCS7D01G158300.1	Wheat	nucleus	13.31	9.38

Protein Annotations

EnsemblPlants:TraesCS7D01G124700.1	EnsemblPlantsGene:TraesCS7D01G124700	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR12565	PANTHER:PTHR12565:SF297	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	:	:	:

Description

No Description!

Coordinates

chr7D:+:78189938..78191874

Molecular Weight (calculated)

36657.0 Da

IEP (calculated)

7.211

GRAVY (calculated)

-0.790

Length

338 amino acids

Sequence
(BLAST)

001: MEERQDGGFG GGGGGAVREL VLMQQERRRR REEEEEEVRR QMFGGGAAFH AAAAAAALGQ QQQHQHQAAE YGELGGGAGG AFYESEAGGS SEPEPHGTSS
101: DRPRGGGGSG SKRTRAAEVH NLSEKRRRSR INEKMKALQS LIPNSNKTDK ASMLDEAIEY LKQLQLQVQM LSMRNGVYLN PSYLSGALEP VQASQMFAAL
201: GVSGRNVAAP SSGAVAPPVN QSSGARHSFD LMNSPQQNQP QPLVLPSCPK TTIPEPPFHL EPSQSHLQSF QLPESSEMML RGELMLKHHL TSAQDRADPP
301: GNKMNSLRQE SSMLNHFDGC SRSKEQSHDM VPANTRHV

Best Arabidopsis Sequence Match ( AT4G36930.1 )
(BLAST)

001: MISQREEREE KKQRVMGDKK LISSSSSSSV YDTRINHHLH HPPSSSDEIS QFLRHIFDRS SPLPSYYSPA TTTTTASLIG VHGSGDPHAD NSRSLVSHHP
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT

Arabidopsis Description

SPTSPT [Source:UniProtKB/TrEMBL;Acc:A0A178UVX7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.