Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 3
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400020534 | Potato | nucleus | 96.82 | 96.82 |
| GSMUA_Achr9P11300_001 | Banana | nucleus | 14.33 | 71.43 |
| CDY37185 | Canola | mitochondrion | 18.15 | 58.16 |
| TraesCS6A01G190600.1 | Wheat | nucleus | 19.43 | 47.29 |
| VIT_18s0001g10270.t01 | Wine grape | nucleus | 47.13 | 40.11 |
| KRH04711 | Soybean | plastid | 20.06 | 39.38 |
| CDY24734 | Canola | plastid | 17.2 | 38.03 |
| AT5G67110.1 | Thale cress | nucleus | 23.89 | 35.71 |
| KRH15381 | Soybean | nucleus | 33.76 | 35.69 |
| KRH05665 | Soybean | nucleus | 33.76 | 35.69 |
| Os06t0164400-01 | Rice | cytosol, mitochondrion, nucleus | 21.97 | 35.03 |
| Bra012133.1-P | Field mustard | nucleus, plastid | 23.25 | 34.11 |
| CDY01438 | Canola | nucleus, plastid | 23.25 | 33.49 |
| OQU75890 | Sorghum | nucleus | 30.89 | 33.33 |
| CDY12804 | Canola | nucleus, plastid | 22.93 | 33.33 |
| TraesCS7A01G126900.1 | Wheat | nucleus | 31.85 | 30.21 |
| TraesCS7D01G124700.1 | Wheat | nucleus | 31.85 | 29.59 |
| GSMUA_Achr10P... | Banana | plastid | 32.17 | 29.45 |
| TraesCS7B01G026300.1 | Wheat | nucleus | 31.53 | 29.2 |
| Os02t0805250-00 | Rice | nucleus | 25.8 | 28.93 |
| HORVU7Hr1G026560.2 | Barley | nucleus | 30.89 | 28.7 |
| Solyc02g093280.2.1 | Tomato | nucleus | 34.39 | 28.57 |
| GSMUA_Achr8P15670_001 | Banana | nucleus | 31.53 | 28.05 |
| KXG31309 | Sorghum | nucleus | 25.8 | 27.74 |
| Zm00001d045212_P001 | Maize | nucleus | 29.62 | 27.43 |
| HORVU6Hr1G088020.4 | Barley | nucleus | 23.57 | 25.0 |
| Zm00001d018416_P001 | Maize | mitochondrion | 25.16 | 23.94 |
| TraesCS6D01G357700.1 | Wheat | nucleus | 22.61 | 23.91 |
| TraesCS6A01G373500.2 | Wheat | nucleus | 22.93 | 23.76 |
| Solyc04g007430.1.1 | Tomato | nucleus | 13.38 | 22.83 |
| TraesCS6B01G411300.1 | Wheat | nucleus | 21.97 | 22.77 |
| Solyc03g115540.1.1 | Tomato | nucleus | 21.66 | 15.49 |
| Solyc01g090790.2.1 | Tomato | nucleus | 22.61 | 15.3 |
| Solyc10g018510.1.1 | Tomato | nucleus | 18.47 | 14.83 |
| Solyc09g065820.2.1 | Tomato | nucleus | 14.01 | 14.57 |
| Solyc06g069600.1.1 | Tomato | nucleus | 19.11 | 14.49 |
| Solyc06g008030.2.1 | Tomato | nucleus | 22.93 | 14.06 |
| GSMUA_Achr7P20810_001 | Banana | nucleus | 26.43 | 13.86 |
| Solyc09g063010.2.1 | Tomato | nucleus | 24.2 | 13.64 |
| Solyc03g005350.2.1 | Tomato | nucleus | 12.74 | 13.51 |
| Solyc07g043580.2.1 | Tomato | nucleus | 21.02 | 13.33 |
| Solyc09g083220.2.1 | Tomato | nucleus | 12.74 | 13.16 |
| Solyc01g102300.2.1 | Tomato | nucleus | 29.62 | 13.01 |
| Solyc12g010170.1.1 | Tomato | nucleus | 14.97 | 12.14 |
| Solyc07g005400.2.1 | Tomato | nucleus | 16.56 | 11.82 |
Protein Annotations
| EnsemblPlants:Solyc04g078690.2.1 | EnsemblPlantsGene:Solyc04g078690.2 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF306 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI0002766C27 | UniProt:K4BUV4 | MapMan:15.5.32 | : | : |
Description
No Description!
Coordinates
chr4:+:63385143..63389952
Molecular Weight (calculated)
34110.4 Da
IEP (calculated)
5.199
GRAVY (calculated)
-0.611
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MADPYRTNPH ASSSLESEDM SSFFLNFLQG TPASSSATAA AGFYNRSGPA PVAESSSSLN FSDPGRFYAA EFKEGVENVF ASAGLGECDG MNSANRREFL
101: EDDKVDNFGF SSEECDGLDM PSDPTHPRSS KRSRSAEVHN LSEKRRRSRI NEKLKALQNL IPNSNKTDKA SMLDEAIEYL KQLQLQVQIL TLRNGLSLYP
201: GYVPGSLQSV QLPSGNEFDG RSFMLSANGG ATLPVNREMP QTAFEISNQN PSGKPTITSH NTENAVALET TIQNHYGLLN HLASSKDMCR DNTLSRLHLD
301: MSCSGNNSSS GVSS
101: EDDKVDNFGF SSEECDGLDM PSDPTHPRSS KRSRSAEVHN LSEKRRRSRI NEKLKALQNL IPNSNKTDKA SMLDEAIEYL KQLQLQVQIL TLRNGLSLYP
201: GYVPGSLQSV QLPSGNEFDG RSFMLSANGG ATLPVNREMP QTAFEISNQN PSGKPTITSH NTENAVALET TIQNHYGLLN HLASSKDMCR DNTLSRLHLD
301: MSCSGNNSSS GVSS
001: MISQREEREE KKQRVMGDKK LISSSSSSSV YDTRINHHLH HPPSSSDEIS QFLRHIFDRS SPLPSYYSPA TTTTTASLIG VHGSGDPHAD NSRSLVSHHP
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT
Arabidopsis Description
SPTSPT [Source:UniProtKB/TrEMBL;Acc:A0A178UVX7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.