Factsheet for Solyc09g065820.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g009890.1.1
Solyc01g009900.2.1
Solyc01g009910.1.1
Solyc01g086860.2.1
Solyc01g112370.2.1
Solyc03g116340.2.1
Solyc05g015910.1.1
Solyc05g053140.2.1
Solyc07g047840.2.1
Solyc07g056360.1.1
Solyc07g062270.2.1
Solyc07g062280.2.1
Solyc09g090720.2.1
Solyc10g007410.2.1
Solyc10g081530.1.1
Solyc12g009980.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02590.1	Solyc07g062270.2.1	AT1G78680.1	21798944
AT4G02590.1	Solyc07g062280.2.1	AT1G78680.1	21798944
AT4G02590.1	Solyc10g007410.2.1	AT1G78680.1	21798944
AT4G02590.1	Solyc12g009980.1.1	AT2G24020.1	21798944
AT4G02590.1	Solyc07g056360.1.1	AT2G42870.1	21798944
AT4G02590.1	Solyc10g081530.1.1	AT3G28715.1	21798944
AT4G02590.1	Solyc03g116340.2.1	AT3G47640.1	21798944
AT4G02590.1	Solyc01g086860.2.1	AT4G25315.1	21798944
AT4G02590.1	Solyc01g112370.2.1	AT4G25315.1	21798944
AT4G02590.1	Solyc01g009890.1.1	AT5G14070.1	21798944
AT4G02590.1	Solyc01g009900.2.1	AT5G14070.1	21798944
AT4G02590.1	Solyc01g009910.1.1	AT5G14070.1	21798944
AT4G02590.1	Solyc05g015910.1.1	AT5G14070.1	21798944
AT4G02590.1	Solyc07g047840.2.1	AT5G15802.1	21798944
AT4G02590.1	Solyc05g053140.2.1	AT5G45620.1	21798944
AT4G02590.1	Solyc09g090720.2.1	AT5G45620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049768	Potato	nucleus	98.34	98.34
Bra036256.1-P	Field mustard	nucleus	60.26	79.82
VIT_07s0141g00220.t01	Wine grape	nucleus	74.5	77.85
KRH32094	Soybean	nucleus	71.52	76.33
KRG95612	Soybean	nucleus	73.18	75.68
Os07t0182200-01	Rice	cytosol	33.77	75.0
KRH67287	Soybean	nucleus	72.52	75.0
Bra018539.1-P	Field mustard	nucleus	61.26	72.83
KRH55381	Soybean	cytosol	16.56	72.46
CDX91293	Canola	nucleus	69.87	70.81
AT4G02590.1	Thale cress	nucleus	72.19	70.32
CDY21898	Canola	nucleus	69.87	70.1
CDY22062	Canola	nucleus	70.53	70.07
CDY18143	Canola	nucleus	70.53	69.61
CDY18011	Canola	nucleus	69.21	68.75
CDX97278	Canola	nucleus	67.55	68.23
CDX89919	Canola	nucleus	70.2	68.17
Bra033368.1-P	Field mustard	nucleus	70.2	68.17
Bra000872.1-P	Field mustard	nucleus	69.21	67.64
CDX90930	Canola	nucleus	69.21	67.42
AT1G03040.3	Thale cress	nucleus	69.21	62.76
GSMUA_Achr4P21070_001	Banana	nucleus	57.28	57.67
OQU88567	Sorghum	nucleus	52.65	57.4
GSMUA_Achr5P03100_001	Banana	nucleus	51.99	57.3
KXG37359	Sorghum	nucleus	52.65	55.99
Zm00001d013073_P002	Maize	nucleus	52.65	55.79
Zm00001d018967_P001	Maize	nucleus	52.65	55.79
Solyc09g083220.2.1	Tomato	nucleus	55.63	55.26
TraesCS5D01G449200.1	Wheat	nucleus	51.32	55.16
TraesCS5B01G445900.1	Wheat	nucleus	51.32	55.16
Os03t0797600-01	Rice	nucleus	52.98	54.42
Solyc03g005350.2.1	Tomato	nucleus	51.66	52.7
TraesCS5A01G441900.1	Wheat	nucleus	49.01	52.67
GSMUA_Achr9P25560_001	Banana	nucleus	58.28	49.86
HORVU5Hr1G106310.3	Barley	nucleus	50.0	48.4
Solyc12g010170.1.1	Tomato	nucleus	42.38	33.07
Solyc07g005400.2.1	Tomato	nucleus	41.72	28.64
Solyc04g007430.1.1	Tomato	nucleus	12.91	21.2
Solyc04g078690.2.1	Tomato	nucleus	14.57	14.01
Solyc02g093280.2.1	Tomato	nucleus	15.89	12.7
Solyc03g115540.1.1	Tomato	nucleus	15.56	10.71
Solyc07g043580.2.1	Tomato	nucleus	16.56	10.1
Solyc10g018510.1.1	Tomato	nucleus	12.91	9.97
Solyc06g008030.2.1	Tomato	nucleus	16.89	9.96
Solyc01g090790.2.1	Tomato	nucleus	15.23	9.91
Solyc09g063010.2.1	Tomato	nucleus	17.88	9.69
Solyc06g069600.1.1	Tomato	nucleus	11.26	8.21
Solyc01g102300.2.1	Tomato	nucleus	19.21	8.11

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	GO:GO:0001046	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:K4CUK8	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF15
SMART:SM00353	SUPFAM:SSF47459	EnsemblPlantsGene:Solyc09g065820.2	EnsemblPlants:Solyc09g065820.2.1	UniParc:UPI00018DFD4F	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:+:64095481..64100029

Molecular Weight (calculated)

32066.0 Da

IEP (calculated)

5.970

GRAVY (calculated)

-0.364

Length

302 amino acids

Sequence
(BLAST)

001: MANNPSEGPS DDFFDQILGF PAYNGAEPNL AGNDAGAIPP AMMLQLNSGD GSSQFTGVGL GVGLGGGGFH GHGGGGSFPL GLSLEQGKGG FLKMDDVSAP
101: GRRFRDDVVD SRASSSVKPG FHGQPMPSMP HPPAIRPRVR ARRGQATDPH SIAERLRRER IAERIRALQE LVPSVNKTDR AVMLDEIVDY IKFLRLQVKV
201: LSMSRLGGAG AVAPLVTDIP ISSVEEESSE GGNNNQPAWE KWSSDGTERQ VAKLMEENVG AAMQFLQSKA LCIMPISLAS AIYHSQPPDT SSLVKPETNP
301: PS

Best Arabidopsis Sequence Match ( AT4G02590.2 )
(BLAST)

001: MASNNPHDNL SDQTPSDDFF EQILGLPNFS ASSAAGLSGV DGGLGGGAPP MMLQLGSGEE GSHMGGLGGS GPTGFHNQMF PLGLSLDQGK GPGFLRPEGG
101: HGSGKRFSDD VVDNRCSSMK PVFHGQPMQQ PPPSAPHQPT SIRPRVRARR GQATDPHSIA ERLRRERIAE RIRALQELVP TVNKTDRAAM IDEIVDYVKF
201: LRLQVKVLSM SRLGGAGAVA PLVTDMPLSS SVEDETGEGG RTPQPAWEKW SNDGTERQVA KLMEENVGAA MQLLQSKALC MMPISLAMAI YHSQPPDTSS
301: VVKPENNPPQ

Arabidopsis Description

UNE12Transcription factor UNE12 [Source:UniProtKB/Swiss-Prot;Acc:O22768]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.