Factsheet for Bra033368.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89919	Canola	nucleus	100.0	100.0
CDY18143	Canola	nucleus	97.43	99.02
Bra036256.1-P	Field mustard	nucleus	62.06	84.65
Bra018539.1-P	Field mustard	nucleus	65.27	79.92
AT1G03040.3	Thale cress	nucleus	85.21	79.58
Bra000872.1-P	Field mustard	nucleus	78.14	78.64
KRG95612	Soybean	nucleus	68.17	72.6
KRH67287	Soybean	nucleus	66.88	71.23
KRH32094	Soybean	nucleus	64.63	71.02
Solyc09g065820.2.1	Tomato	nucleus	68.17	70.2
PGSC0003DMT400049768	Potato	nucleus	67.85	69.87
Os07t0182200-01	Rice	cytosol	30.55	69.85
VIT_07s0141g00220.t01	Wine grape	nucleus	63.99	68.86
KRH55381	Soybean	cytosol	14.47	65.22
GSMUA_Achr4P21070_001	Banana	nucleus	53.05	55.0
Zm00001d013073_P002	Maize	nucleus	49.52	54.04
KXG37359	Sorghum	nucleus	49.2	53.87
OQU88567	Sorghum	nucleus	47.59	53.43
Os03t0797600-01	Rice	nucleus	50.48	53.4
TraesCS5B01G445900.1	Wheat	nucleus	48.23	53.38
TraesCS5D01G449200.1	Wheat	nucleus	48.23	53.38
Zm00001d018967_P001	Maize	nucleus	48.87	53.33
GSMUA_Achr5P03100_001	Banana	nucleus	46.62	52.92
TraesCS5A01G441900.1	Wheat	nucleus	45.34	50.18
HORVU5Hr1G106310.3	Barley	nucleus	46.95	46.79
GSMUA_Achr9P25560_001	Banana	nucleus	51.77	45.61
Bra011237.1-P	Field mustard	plastid	29.58	42.59
Bra020398.1-P	Field mustard	nucleus	32.8	36.43
Bra002679.1-P	Field mustard	nucleus	32.48	34.95
Bra006788.1-P	Field mustard	nucleus	31.19	32.33
Bra032111.1-P	Field mustard	nucleus	35.05	31.32
Bra007863.1-P	Field mustard	nucleus	33.44	30.77
Bra012133.1-P	Field mustard	nucleus, plastid	12.22	17.76
Bra037312.1-P	Field mustard	nucleus	10.93	16.27
Bra010591.1-P	Field mustard	nucleus, plastid	13.5	12.32
Bra011740.1-P	Field mustard	nucleus, plastid	13.18	11.58
Bra037742.1-P	Field mustard	nucleus	15.11	11.58
Bra000560.1-P	Field mustard	nucleus	14.15	11.34
Bra000283.1-P	Field mustard	nucleus	14.79	11.14
Bra004489.1-P	Field mustard	nucleus	14.15	11.0
Bra003483.1-P	Field mustard	nucleus	10.61	10.75
Bra007430.1-P	Field mustard	nucleus	14.47	10.56
Bra000436.1-P	Field mustard	nucleus	12.54	9.65
Bra031668.1-P	Field mustard	nucleus	14.15	8.94
Bra020017.1-P	Field mustard	nucleus	14.15	8.91
Bra007660.1-P	Field mustard	nucleus	11.25	8.29
Bra011061.1-P	Field mustard	nucleus	13.18	7.93
Bra011062.1-P	Field mustard	cytosol	10.29	6.99

Protein Annotations

EnsemblPlants:Bra033368.1	EnsemblPlants:Bra033368.1-P	EnsemblPlantsGene:Bra033368	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR16223	PANTHER:PTHR16223:SF15	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002544BD5	UniProt:M4EX33	MapMan:15.5.32	:	:

Description

AT1G03040 (E=5e-107) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA10:+:4037666..4039589

Molecular Weight (calculated)

33239.7 Da

IEP (calculated)

6.515

GRAVY (calculated)

-0.423

Length

311 amino acids

Sequence
(BLAST)

001: MATNNNNNLS DQPPSDDFFE QILGISNFSA SSSSGGLSGL PGGLSGGVGP PPPMMLQLGS GEEGSHHNHM GVGPIGGGGG PLGFHNGMFP LGLSLDQGGK
101: GQGFLKPDGS GKRFQDDVVD NRCSSMKPVF HGQPMTQPAP PMPHQQSSIR PRVRARRGQA TDPHSIAERL RRERIAERIR ALQELVPTVN KTDRAAMIDE
201: IVDYVKFLRL QVKVLSMSRL GGAGAVAPLV TEMPLSSSTE DETQAVWEKW SDDGTERQVA KLMEENVGAA MQLLQSKALC IMPVSLAMAI YHSQPPDTSS
301: SVVKPEMNPP Q

Best Arabidopsis Sequence Match ( AT1G03040.1 )
(BLAST)

001: MANNNNIPHD SISDPSPTDD FFEQILGLSN FSGSSGSGLS GIGGVGPPPM MLQLGSGNEG NHNHMGAIGG GGPVGFHNQM FPLGLSLDQG KGHGFLKPDE
101: TGKRFQDDVL DNRCSSMKPI FHGQPMSQPA PPMPHQQSTI RPRVRARRGQ ATDPHSIAER LRRERIAERI RSLQELVPTV NKTDRAAMID EIVDYVKFLR
201: LQVKVLSMSR LGGAGAVAPL VTEMPLSSSV EDETQAVWEK WSNDGTERQV AKLMEENVGA AMQLLQSKAL CIMPISLAMA IYHSQPPDTS SSIVKPEMNP
301: PP

Arabidopsis Description

basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G03040]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.