Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88653 | Canola | nucleus | 98.0 | 98.0 |
| CDY11836 | Canola | nucleus | 91.0 | 95.45 |
| Bra020398.1-P | Field mustard | nucleus | 81.0 | 86.79 |
| Bra002679.1-P | Field mustard | nucleus | 81.67 | 84.78 |
| AT5G58010.1 | Thale cress | nucleus | 79.67 | 80.47 |
| Bra011237.1-P | Field mustard | plastid | 38.0 | 52.78 |
| Bra036256.1-P | Field mustard | nucleus | 31.33 | 41.23 |
| Bra007863.1-P | Field mustard | nucleus | 42.0 | 37.28 |
| Bra032111.1-P | Field mustard | nucleus | 42.33 | 36.49 |
| Bra018539.1-P | Field mustard | nucleus | 30.33 | 35.83 |
| Bra000872.1-P | Field mustard | nucleus | 34.0 | 33.01 |
| Bra033368.1-P | Field mustard | nucleus | 32.33 | 31.19 |
| GSMUA_Achr9P18080_001 | Banana | nucleus | 37.33 | 23.09 |
| Os06t0193400-01 | Rice | nucleus | 36.67 | 23.01 |
| Zm00001d016873_P001 | Maize | nucleus | 37.0 | 22.7 |
| KXG30460 | Sorghum | nucleus | 37.67 | 22.33 |
| KXG19523 | Sorghum | nucleus | 35.67 | 21.75 |
| TraesCS7A01G157700.1 | Wheat | nucleus | 34.67 | 21.67 |
| TraesCS7B01G062100.2 | Wheat | nucleus | 34.67 | 21.67 |
| TraesCS7D01G158300.1 | Wheat | nucleus | 34.67 | 21.67 |
| VIT_11s0016g00380.t01 | Wine grape | nucleus | 38.67 | 21.64 |
| Zm00001d045046_P001 | Maize | nucleus | 34.67 | 21.62 |
| Bra012133.1-P | Field mustard | nucleus, plastid | 15.33 | 21.5 |
| HORVU7Hr1G032420.3 | Barley | nucleus | 34.33 | 21.41 |
| GSMUA_Achr3P10120_001 | Banana | nucleus | 38.33 | 21.1 |
| Bra037312.1-P | Field mustard | nucleus | 14.67 | 21.05 |
| Os02t0564700-01 | Rice | nucleus | 36.33 | 20.8 |
| Zm00001d037098_P003 | Maize | nucleus | 35.0 | 20.15 |
| Bra010591.1-P | Field mustard | nucleus, plastid | 17.33 | 15.25 |
| Bra011740.1-P | Field mustard | nucleus, plastid | 17.33 | 14.69 |
| Bra000560.1-P | Field mustard | nucleus | 18.33 | 14.18 |
| Bra004489.1-P | Field mustard | nucleus | 16.67 | 12.5 |
| Bra003483.1-P | Field mustard | nucleus | 12.67 | 12.38 |
| Bra000436.1-P | Field mustard | nucleus | 16.33 | 12.13 |
| Bra000283.1-P | Field mustard | nucleus | 16.67 | 12.11 |
| Bra037742.1-P | Field mustard | nucleus | 16.33 | 12.07 |
| Bra007430.1-P | Field mustard | nucleus | 16.0 | 11.27 |
| Bra020017.1-P | Field mustard | nucleus | 17.0 | 10.32 |
| Bra031668.1-P | Field mustard | nucleus | 16.67 | 10.16 |
| Bra007660.1-P | Field mustard | nucleus | 12.0 | 8.53 |
| Bra011061.1-P | Field mustard | nucleus | 13.67 | 7.93 |
| Bra011062.1-P | Field mustard | cytosol | 12.0 | 7.86 |
Protein Annotations
| EnsemblPlants:Bra006788.1 | EnsemblPlants:Bra006788.1-P | EnsemblPlantsGene:Bra006788 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR16223 | PANTHER:PTHR16223:SF28 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI0002540381 | UniProt:M4CRE7 | MapMan:15.5.32 | : | : |
Description
AT5G58010 (E=3e-074) | basic helix-loop-helix (bHLH) family protein
Coordinates
chrA03:+:5052775..5054030
Molecular Weight (calculated)
31949.6 Da
IEP (calculated)
6.375
GRAVY (calculated)
-0.560
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MHEEAKDEDR RQEEMENGNG EGKGEFISQN NNGFFDSMSM LSSLPPPWGS SLPPSPPPPH SLLHALTESG GPTTGSQDGL QQAQGTVSTT TSPPVARQKP
101: RVRARRGQAT DPHSIAERLR RERIAERMKS LQELVPNTNK TDKASMLDEI IEYVRFLQLQ VKVLSMSRLG AARANGPRLN GLTSEVGGRL NALSVPSNGV
201: VNGNGNATGS SNESLRSTEQ RVAKLMEEDM GSAMQYLQGK GLCLMPIALA TAMSSSSAHS RGALFNPTSN IVATEEANVV VAAAPEASSP MDDVSASNKA
101: RVRARRGQAT DPHSIAERLR RERIAERMKS LQELVPNTNK TDKASMLDEI IEYVRFLQLQ VKVLSMSRLG AARANGPRLN GLTSEVGGRL NALSVPSNGV
201: VNGNGNATGS SNESLRSTEQ RVAKLMEEDM GSAMQYLQGK GLCLMPIALA TAMSSSSAHS RGALFNPTSN IVATEEANVV VAAAPEASSP MDDVSASNKA
001: MENGNGEGKG EFINQNNDFF LDSMSMLSSL PPCWDPSLPP PPPPPQSLFH ALAVDAPFPD QFHHPQESGG PTMGSQEGLQ PQGTVSTTSA PVVRQKPRVR
101: ARRGQATDPH SIAERLRRER IAERMKSLQE LVPNTNKTDK ASMLDEIIEY VRFLQLQVKV LSMSRLGGAG SVGPRLNGLS AEAGGRLNAL TAPCNGLNGN
201: GNATGSSNES LRSTEQRVAK LMEEDMGSAM QYLQGKGLCL MPISLATAIS SSTTHSRGSL FNPISSAVAA EDSNVTATAV AAPEASSTMD DVSASKA
101: ARRGQATDPH SIAERLRRER IAERMKSLQE LVPNTNKTDK ASMLDEIIEY VRFLQLQVKV LSMSRLGGAG SVGPRLNGLS AEAGGRLNAL TAPCNGLNGN
201: GNATGSSNES LRSTEQRVAK LMEEDMGSAM QYLQGKGLCL MPISLATAIS SSTTHSRGSL FNPISSAVAA EDSNVTATAV AAPEASSTMD DVSASKA
Arabidopsis Description
BHLH82LRL3 [Source:UniProtKB/TrEMBL;Acc:A0A178UI77]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.