Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra012964.1-P | |
| Bra035933.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G46970.1 | Bra012964.1-P | AT5G61380.1 | 11828029 |
| AT2G46970.1 | Bra035933.1-P | AT5G61380.1 | 11828029 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80064 | Canola | nucleus | 99.75 | 99.75 |
| CDY66254 | Canola | nucleus | 95.25 | 95.25 |
| Bra000436.1-P | Field mustard | nucleus | 74.5 | 73.76 |
| AT2G46970.1 | Thale cress | nucleus | 72.25 | 69.47 |
| Bra003483.1-P | Field mustard | nucleus | 37.5 | 48.86 |
| Bra007660.1-P | Field mustard | nucleus | 37.25 | 35.31 |
| VIT_07s0005g02510.t01 | Wine grape | nucleus | 14.25 | 28.5 |
| KRH69138 | Soybean | cytosol, nucleus, vacuole | 11.0 | 24.44 |
| Bra037312.1-P | Field mustard | nucleus | 11.75 | 22.49 |
| Bra012133.1-P | Field mustard | nucleus, plastid | 11.25 | 21.03 |
| Bra011237.1-P | Field mustard | plastid | 10.75 | 19.91 |
| Bra000560.1-P | Field mustard | nucleus | 19.0 | 19.59 |
| KRH33663 | Soybean | nucleus | 21.0 | 18.71 |
| Bra020398.1-P | Field mustard | nucleus | 13.0 | 18.57 |
| Bra007430.1-P | Field mustard | nucleus | 19.75 | 18.54 |
| Bra020017.1-P | Field mustard | nucleus | 22.75 | 18.42 |
| Bra036256.1-P | Field mustard | nucleus | 10.5 | 18.42 |
| Bra031668.1-P | Field mustard | nucleus | 22.5 | 18.29 |
| Bra037742.1-P | Field mustard | nucleus | 18.5 | 18.23 |
| Bra010591.1-P | Field mustard | nucleus, plastid | 15.5 | 18.18 |
| Bra000283.1-P | Field mustard | nucleus | 18.75 | 18.16 |
| Bra002679.1-P | Field mustard | nucleus | 13.0 | 17.99 |
| TraesCS1B01G100400.2 | Wheat | nucleus | 22.0 | 17.53 |
| Bra011740.1-P | Field mustard | nucleus, plastid | 15.5 | 17.51 |
| KRH68348 | Soybean | nucleus | 22.5 | 17.41 |
| TraesCS1D01G084200.1 | Wheat | nucleus | 21.75 | 17.33 |
| Os05t0139100-01 | Rice | nucleus | 21.75 | 17.23 |
| HORVU1Hr1G017900.1 | Barley | nucleus | 21.0 | 17.04 |
| TraesCS1A01G083000.1 | Wheat | nucleus | 21.5 | 16.96 |
| Zm00001d024783_P001 | Maize | nucleus | 21.25 | 16.83 |
| KRG96615 | Soybean | nucleus | 21.75 | 16.8 |
| Bra006788.1-P | Field mustard | nucleus | 12.5 | 16.67 |
| Bra018539.1-P | Field mustard | nucleus | 10.5 | 16.54 |
| Bra000872.1-P | Field mustard | nucleus | 12.0 | 15.53 |
| Zm00001d040536_P005 | Maize | nucleus | 22.0 | 15.52 |
| GSMUA_Achr1P19000_001 | Banana | mitochondrion, nucleus | 22.5 | 15.18 |
| Bra007863.1-P | Field mustard | nucleus | 12.75 | 15.09 |
| Bra032111.1-P | Field mustard | nucleus | 13.0 | 14.94 |
| KXG32305 | Sorghum | nucleus | 22.5 | 14.9 |
| Os01t0286100-01 | Rice | nucleus | 23.0 | 14.44 |
| Bra033368.1-P | Field mustard | nucleus | 11.0 | 14.15 |
| Zm00001d008205_P001 | Maize | nucleus | 22.5 | 14.11 |
| PGSC0003DMT400047079 | Potato | nucleus | 24.5 | 13.84 |
| Solyc01g102300.2.1 | Tomato | nucleus | 23.75 | 13.29 |
| KXG21255 | Sorghum | nucleus | 22.5 | 13.08 |
| Bra011061.1-P | Field mustard | nucleus | 16.5 | 12.77 |
| Bra011062.1-P | Field mustard | cytosol | 11.0 | 9.61 |
Protein Annotations
| EnsemblPlants:Bra004489.1 | EnsemblPlants:Bra004489.1-P | EnsemblPlantsGene:Bra004489 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF194 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI00025472C8 | UniProt:M4CJV5 | MapMan:15.5.32 | : | : |
Description
AT2G46970 (E=8e-106) PIL1 | PIL1 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 1); transcription factor
Coordinates
chrA05:+:409883..411779
Molecular Weight (calculated)
44844.0 Da
IEP (calculated)
8.728
GRAVY (calculated)
-0.824
Length
400 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKNLCASSS QPNMISPSSS LKPTLNDQDY MELVCENGQI LAKSRKTNNN GYFQNQRRQS ILDLYESEYD ESFKKNIKNH EETQVVPVSD EQTNNKKRTK
101: PSKNELERDL LKGSKRFESP TLNGYSLNGL KNVEVIKAPP DEQSEAVGRS TKLYFTPSSM LSRGTSRDLS SSSKKRKCGD NEEEEEETTY LSNSSDDESD
201: DAKTRVPART RKTMAKRKRS TEVHRLSERK RRHEISKKMR ALQDLLPNCY KDDKVSLLDE AIKYMRTLQL QVQMMSMGNG FIQPSVMLPM GNYSPMGLGM
301: HMGAAATTPS LPQFMPMNVQ GTGFHGITNA SSQMLSAFLN HPTGLIPNSP IFSPLESCSQ QLVTPSCFPE TQTTSFSQFP MSGSTTNFED AMQFRGSSGY
101: PSKNELERDL LKGSKRFESP TLNGYSLNGL KNVEVIKAPP DEQSEAVGRS TKLYFTPSSM LSRGTSRDLS SSSKKRKCGD NEEEEEETTY LSNSSDDESD
201: DAKTRVPART RKTMAKRKRS TEVHRLSERK RRHEISKKMR ALQDLLPNCY KDDKVSLLDE AIKYMRTLQL QVQMMSMGNG FIQPSVMLPM GNYSPMGLGM
301: HMGAAATTPS LPQFMPMNVQ GTGFHGITNA SSQMLSAFLN HPTGLIPNSP IFSPLESCSQ QLVTPSCFPE TQTTSFSQFP MSGSTTNFED AMQFRGSSGY
001: MEAKPLASSS SEPNMISPSS NIKPKLKDED YMELVCENGQ ILAKIRRPKN NGSFQKQRRQ SLLDLYETEY SEGFKKNIKI LGDTQVVPVS QSKPQQDKET
101: NEQMNNNKKK LKSSKIEFER NVSKSNKCVE SSTLIDVSAK GPKNVEVTTA PPDEQSAAVG RSTELYFASS SKFSRGTSRD LSCCSLKRKY GDIEEEESTY
201: LSNNSDDESD DAKTQVHART RKPVTKRKRS TEVHKLYERK RRDEFNKKMR ALQDLLPNCY KDDKASLLDE AIKYMRTLQL QVQMMSMGNG LIRPPTMLPM
301: GHYSPMGLGM HMGAAATPTS IPQFLPMNVQ ATGFPGMNNA PPQMLSFLNH PSGLIPNTPI FSPLENCSQP FVVPSCVSQT QATSFTQFPK SASASNLEDA
401: MQYRGSNGFS YYRSPN
101: NEQMNNNKKK LKSSKIEFER NVSKSNKCVE SSTLIDVSAK GPKNVEVTTA PPDEQSAAVG RSTELYFASS SKFSRGTSRD LSCCSLKRKY GDIEEEESTY
201: LSNNSDDESD DAKTQVHART RKPVTKRKRS TEVHKLYERK RRDEFNKKMR ALQDLLPNCY KDDKASLLDE AIKYMRTLQL QVQMMSMGNG LIRPPTMLPM
301: GHYSPMGLGM HMGAAATPTS IPQFLPMNVQ ATGFPGMNNA PPQMLSFLNH PSGLIPNTPI FSPLENCSQP FVVPSCVSQT QATSFTQFPK SASASNLEDA
401: MQYRGSNGFS YYRSPN
Arabidopsis Description
PIL1Transcription factor PIL1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5W8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.