Factsheet for Solyc01g102300.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 30362122

gfp PMID: 30362122 doi

G Gramegna, D Rosado, AP Sánchez Carranza, AB Cruz, M Simon-Moya, B Llorente, M Rodríguez-Concepcíon, L Freschi, M Rossi

Centre for Research in Agricultural Genomics, CSIC-IRTA-UAB-UB, Campus UAB Bellaterra, 08193, Barcelona, Spain., CSIRO Synthetic Biology Future Science Platform, 3004, Melbourne, Australia., Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, São Paulo, 05508-900, SP, Brazil., Department of Molecular Sciences, Macquarie University, 2109, New South Wales, Australia.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g115770.2.1
Solyc06g069690.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46970.1	Solyc03g115770.2.1	AT5G61380.1	11828029
AT2G46970.1	Solyc06g069690.2.1	AT5G61380.1	11828029

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047079	Potato	nucleus	91.89	92.8
VIT_07s0005g02510.t01	Wine grape	nucleus	13.99	50.0
Bra020017.1-P	Field mustard	nucleus	25.73	37.25
CDY64745	Canola	nucleus	25.59	36.45
AT1G09530.3	Thale cress	nucleus	26.71	36.45
KRG96663	Soybean	nucleus	32.17	36.33
CDX94963	Canola	nucleus	24.9	35.74
CDY22636	Canola	nucleus	24.48	35.64
KRH68390	Soybean	nucleus	31.05	35.58
Bra031668.1-P	Field mustard	nucleus	24.48	35.57
CDY06358	Canola	nucleus	24.2	35.23
KXG32305	Sorghum	nucleus	26.43	31.29
Zm00001d040536_P005	Maize	nucleus	24.76	31.22
GSMUA_Achr1P19000_001	Banana	mitochondrion, nucleus	25.45	30.69
KRH69138	Soybean	cytosol, nucleus, vacuole	7.55	30.0
Solyc04g078690.2.1	Tomato	nucleus	13.01	29.62
Zm00001d024783_P001	Maize	nucleus	20.7	29.31
Os01t0286100-01	Rice	nucleus	25.59	28.73
Os05t0139100-01	Rice	nucleus	20.14	28.51
Solyc04g007430.1.1	Tomato	nucleus	7.13	27.72
TraesCS1B01G100400.2	Wheat	nucleus	19.44	27.69
Solyc09g063010.2.1	Tomato	nucleus	21.54	27.65
HORVU1Hr1G017900.1	Barley	nucleus	19.02	27.59
Zm00001d008205_P001	Maize	nucleus	24.62	27.59
TraesCS1D01G084200.1	Wheat	nucleus	19.3	27.49
TraesCS1A01G083000.1	Wheat	nucleus	19.44	27.42
Solyc07g043580.2.1	Tomato	nucleus	18.32	26.46
Solyc06g008030.2.1	Tomato	nucleus	18.88	26.37
Solyc02g093280.2.1	Tomato	nucleus	13.43	25.4
CDX67873	Canola	nucleus	10.77	25.08
Bra003483.1-P	Field mustard	nucleus	10.77	25.08
KRH33663	Soybean	nucleus	15.52	24.72
AT2G46970.1	Thale cress	nucleus	14.13	24.28
AT3G62090.2	Thale cress	nucleus	12.31	24.24
Bra004489.1-P	Field mustard	nucleus	13.29	23.75
CDX80064	Canola	nucleus	13.29	23.75
KRH68348	Soybean	nucleus	17.06	23.6
CDY65446	Canola	nucleus	10.77	23.26
CDX83349	Canola	nucleus	13.01	23.02
Bra000436.1-P	Field mustard	nucleus	12.87	22.77
CDY66254	Canola	nucleus	12.73	22.75
KRG96615	Soybean	nucleus	16.22	22.39
KXG21255	Sorghum	nucleus	21.12	21.95
Solyc01g090790.2.1	Tomato	nucleus	14.13	21.77
Solyc03g115540.1.1	Tomato	nucleus	13.15	21.41
CDY50911	Canola	nucleus	8.11	21.4
Solyc10g018510.1.1	Tomato	nucleus	11.33	20.72
CDX76616	Canola	extracellular	10.07	20.11
Solyc06g069600.1.1	Tomato	nucleus	11.61	20.05
CDY11401	Canola	extracellular	9.79	19.89
Solyc03g005350.2.1	Tomato	nucleus	8.11	19.59
Solyc09g065820.2.1	Tomato	nucleus	8.11	19.21
Solyc09g083220.2.1	Tomato	nucleus	7.69	18.09
Solyc12g010170.1.1	Tomato	nucleus	9.65	17.83
Bra007660.1-P	Field mustard	nucleus	10.35	17.54
Solyc07g005400.2.1	Tomato	nucleus	9.93	16.14

Protein Annotations

EnsemblPlants:Solyc01g102300.2.1	EnsemblPlantsGene:Solyc01g102300.2	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR12565	PANTHER:PTHR12565:SF284	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002767A8C	UniProt:K4B1F8	MapMan:15.5.32	MapMan:26.1.1.4	:

Description

No Description!

Coordinates

chr1:+:91123061..91127641

Molecular Weight (calculated)

76336.3 Da

IEP (calculated)

7.423

GRAVY (calculated)

-0.625

Length

715 amino acids

Sequence
(BLAST)

001: MAIGKPESGQ QKISSTSNLS SFPENDLVEL KWQNGQIVMQ GQNSSAKKST VPNNLPSSAS GDRDKYTGNS STSKIGKFGL MDSMLNDMSL TVPTGELDLI
101: QEDEGVPWLG YPADDSLQQD YCAQLLPEIS GVTANEQSGQ SVFGLINKRG SSDKMIGDSH SVPVHNAVNF ERRNTSKVSP SSRFSPLSSL PSQKGHASIP
201: TLESGVSDVF SSKNSNTPLS VLGESNQSKA SAGDAKSNRI QKQNMPGNRS NLLNFSHFSR PATLVKAAKL QSSTGGSNIS GSPILEAKGK KGEEKVTIGD
301: NHVSAAATEN FLTSKKDNFP HYPTNGVSSQ LESRPSGASF HDRSCQAEQS DNAFRDCSSN NDNTHDHFTS AKATKDIADG ERNVEHGVAC SSVCSGSSAE
401: RGSSDQPLNL KRKTRDNEEF ECRSEDVEEE SVGIKKPCAA RGGTGSKRSR AAEVHNLSER RRRDRINEKM RALQELIPNC NKADKASMLD EAIEYLKTLQ
501: LQVQIMSVGA GLCVPPMMFP MQHMHGAQMP HFSPMSLGMG MGMGFGLGML EMNGRSSGYP MYPMPSVQGG HFPSPPIPAS TAYPGIAVSN RHVFAHPGQG
601: LPMSIPRASL GPLAGQPSTG AAVPMNVARE GVPVEIRGAQ PNLDSKTPVH KNSQIVQNAE ASCPQNQTCS QVQATNEVLE KSAQKNDQLP DVIGSAANRL
701: TNRTNVPGNE AGPSL

Best Arabidopsis Sequence Match ( AT1G09530.3 )
(BLAST)

001: MPLFELFRLT KAKLESAQDR NPSPPVDEVV ELVWENGQIS TQSQSSRSRN IPPPQANSSR AREIGNGSKT TMVDEIPMSV PSLMTGLSQD DDFVPWLNHH
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS

Arabidopsis Description

PIF3Transcription factor PIF3 [Source:UniProtKB/Swiss-Prot;Acc:O80536]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.