Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G46970.1 | CDX87210 | AT5G61380.1 | 11828029 |
| AT2G46970.1 | CDY02151 | AT5G61380.1 | 11828029 |
| AT2G46970.1 | CDY64140 | AT5G61380.1 | 11828029 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000436.1-P | Field mustard | nucleus | 92.25 | 61.88 |
| CDX83349 | Canola | nucleus | 92.25 | 61.88 |
| CDY66254 | Canola | nucleus | 73.43 | 49.75 |
| CDX80064 | Canola | nucleus | 73.06 | 49.5 |
| AT2G46970.1 | Thale cress | nucleus | 71.22 | 46.39 |
| CDX67873 | Canola | nucleus | 36.9 | 32.57 |
| CDY65446 | Canola | nucleus | 38.38 | 31.42 |
| CDX76616 | Canola | extracellular | 37.27 | 28.21 |
| CDY11401 | Canola | extracellular | 35.06 | 26.99 |
| CDY37185 | Canola | mitochondrion | 7.75 | 21.43 |
| VIT_07s0005g02510.t01 | Wine grape | nucleus | 12.92 | 17.5 |
| CDY35224 | Canola | nucleus | 15.5 | 16.22 |
| KRH69138 | Soybean | cytosol, nucleus, vacuole | 9.96 | 15.0 |
| CDY00603 | Canola | nucleus, plastid | 15.13 | 14.96 |
| CDY67566 | Canola | nucleus, plastid | 15.13 | 14.96 |
| CDY65390 | Canola | nucleus | 11.44 | 14.83 |
| CDX91917 | Canola | nucleus | 17.34 | 13.54 |
| CDY44048 | Canola | nucleus, plastid | 16.97 | 13.49 |
| CDY06865 | Canola | nucleus | 17.71 | 13.37 |
| CDX83214 | Canola | nucleus | 16.97 | 13.22 |
| CDY21498 | Canola | nucleus | 18.45 | 12.92 |
| CDX74328 | Canola | nucleus | 18.45 | 12.92 |
| CDY22448 | Canola | nucleus, plastid | 16.61 | 12.78 |
| CDY24734 | Canola | plastid | 6.64 | 12.68 |
| CDY12804 | Canola | nucleus, plastid | 9.96 | 12.5 |
| CDY01438 | Canola | nucleus, plastid | 9.96 | 12.39 |
| CDX75629 | Canola | nucleus | 15.5 | 12.14 |
| CDX69281 | Canola | nucleus, plastid | 15.5 | 12.03 |
| CDY11836 | Canola | nucleus | 12.55 | 11.89 |
| KRH33663 | Soybean | nucleus | 19.56 | 11.8 |
| CDY06870 | Canola | nucleus | 19.56 | 11.65 |
| CDY55014 | Canola | nucleus | 12.18 | 11.42 |
| CDY14866 | Canola | nucleus | 16.97 | 11.41 |
| CDY32733 | Canola | nucleus | 12.55 | 11.26 |
| CDY02785 | Canola | nucleus | 12.18 | 11.15 |
| CDY31989 | Canola | nucleus | 19.56 | 11.13 |
| CDY05725 | Canola | nucleus | 20.66 | 11.05 |
| CDX88653 | Canola | nucleus | 12.18 | 11.0 |
| CDY62262 | Canola | nucleus | 12.18 | 10.93 |
| CDX83509 | Canola | nucleus | 16.61 | 10.9 |
| CDX70453 | Canola | nucleus | 16.24 | 10.81 |
| CDY29961 | Canola | nucleus | 16.24 | 10.81 |
| CDX68710 | Canola | nucleus | 12.92 | 10.7 |
| CDY28232 | Canola | nucleus | 12.92 | 10.7 |
| Os05t0139100-01 | Rice | nucleus | 19.93 | 10.69 |
| CDY06026 | Canola | nucleus | 17.34 | 10.63 |
| CDX71916 | Canola | nucleus | 17.34 | 10.61 |
| CDY30375 | Canola | nucleus | 15.87 | 10.59 |
| CDY06358 | Canola | nucleus | 19.19 | 10.59 |
| CDY22636 | Canola | nucleus | 19.19 | 10.59 |
| TraesCS1B01G100400.2 | Wheat | nucleus | 19.56 | 10.56 |
| CDY35220 | Canola | nucleus | 14.39 | 10.51 |
| CDY46133 | Canola | nucleus | 7.38 | 10.47 |
| CDX94963 | Canola | nucleus | 19.19 | 10.44 |
| CDY20289 | Canola | nucleus | 8.12 | 10.43 |
| CDY64745 | Canola | nucleus | 19.19 | 10.36 |
| TraesCS1D01G084200.1 | Wheat | nucleus | 19.19 | 10.36 |
| KRH68348 | Soybean | nucleus | 19.56 | 10.25 |
| KRG96615 | Soybean | nucleus | 19.56 | 10.23 |
| CDY42809 | Canola | nucleus | 15.5 | 10.14 |
| CDY34780 | Canola | nucleus | 12.55 | 10.06 |
| TraesCS1A01G083000.1 | Wheat | nucleus | 18.82 | 10.06 |
| HORVU1Hr1G017900.1 | Barley | nucleus | 18.08 | 9.94 |
| Zm00001d024783_P001 | Maize | nucleus | 18.45 | 9.9 |
| CDX76819 | Canola | nucleus | 12.18 | 9.71 |
| GSMUA_Achr1P19000_001 | Banana | mitochondrion, nucleus | 21.03 | 9.61 |
| CDY06867 | Canola | nucleus | 16.97 | 9.54 |
| KXG32305 | Sorghum | nucleus | 20.3 | 9.11 |
| CDX91293 | Canola | nucleus | 9.96 | 9.06 |
| CDX97278 | Canola | nucleus | 9.96 | 9.03 |
| Zm00001d040536_P005 | Maize | nucleus | 18.82 | 8.99 |
| CDY18011 | Canola | nucleus | 9.96 | 8.88 |
| CDY22062 | Canola | nucleus | 9.96 | 8.88 |
| PGSC0003DMT400047079 | Potato | nucleus | 22.88 | 8.76 |
| CDY21898 | Canola | nucleus | 9.59 | 8.64 |
| Os01t0286100-01 | Rice | nucleus | 20.3 | 8.63 |
| CDX90930 | Canola | nucleus | 9.59 | 8.39 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 6.27 | 8.37 |
| CDY18143 | Canola | nucleus | 9.23 | 8.17 |
| Zm00001d008205_P001 | Maize | nucleus | 19.19 | 8.15 |
| Solyc01g102300.2.1 | Tomato | nucleus | 21.4 | 8.11 |
| CDX89919 | Canola | nucleus | 9.23 | 8.04 |
| KXG21255 | Sorghum | nucleus | 19.93 | 7.85 |
| CDY35222 | Canola | nucleus | 15.13 | 7.11 |
| CDY46132 | Canola | endoplasmic reticulum | 4.06 | 6.25 |
Protein Annotations
| EnsemblPlants:CDY50911 | EnsemblPlantsGene:GSBRNA2T00097758001 | Gene3D:4.10.280.10 | GO:A0A078ILN4 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF194 | PFAM:PF00010 | PFscan:PS50888 | ProteinID:CDY50911 | ProteinID:CDY50911.1 |
| SEG:seg | SUPFAM:SSF47459 | UniParc:UPI0004EEEFAF | UniProt:A0A078ILN4 | MapMan:15.5.32 | : |
Description
BnaC03g72400DBnaC03g72400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ILN4]
Coordinates
chrLK032948:-:23749..25660
Molecular Weight (calculated)
29809.6 Da
IEP (calculated)
8.606
GRAVY (calculated)
-0.421
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MVIFSSLLHI LDLYETEYDE GFKKNIKNLG GSQVVPNVEV ITAPPDEQSI AVGRSAELYF ASSSMLSGGT SRDLKLLFFK KEKSDDGSDD GKTRVTATTR
101: KTVAKKKRST EVHKLSERKR RNEISKKLCE LQDLLPNCYK DDKMMSMGNG IIPSTSTMLA MGHYSPTGLR MHMGEAATTT SVPQFLPMNL QGTGFSRINE
201: ASSQMLSNFL NHHTGLIPNS PIFSPLESCS HQFVVPSCFP GTHSTSFTPF SKSAPTSNLE DAMQFKGSNG Y
101: KTVAKKKRST EVHKLSERKR RNEISKKLCE LQDLLPNCYK DDKMMSMGNG IIPSTSTMLA MGHYSPTGLR MHMGEAATTT SVPQFLPMNL QGTGFSRINE
201: ASSQMLSNFL NHHTGLIPNS PIFSPLESCS HQFVVPSCFP GTHSTSFTPF SKSAPTSNLE DAMQFKGSNG Y
001: MEAKPLASSS SEPNMISPSS NIKPKLKDED YMELVCENGQ ILAKIRRPKN NGSFQKQRRQ SLLDLYETEY SEGFKKNIKI LGDTQVVPVS QSKPQQDKET
101: NEQMNNNKKK LKSSKIEFER NVSKSNKCVE SSTLIDVSAK GPKNVEVTTA PPDEQSAAVG RSTELYFASS SKFSRGTSRD LSCCSLKRKY GDIEEEESTY
201: LSNNSDDESD DAKTQVHART RKPVTKRKRS TEVHKLYERK RRDEFNKKMR ALQDLLPNCY KDDKASLLDE AIKYMRTLQL QVQMMSMGNG LIRPPTMLPM
301: GHYSPMGLGM HMGAAATPTS IPQFLPMNVQ ATGFPGMNNA PPQMLSFLNH PSGLIPNTPI FSPLENCSQP FVVPSCVSQT QATSFTQFPK SASASNLEDA
401: MQYRGSNGFS YYRSPN
101: NEQMNNNKKK LKSSKIEFER NVSKSNKCVE SSTLIDVSAK GPKNVEVTTA PPDEQSAAVG RSTELYFASS SKFSRGTSRD LSCCSLKRKY GDIEEEESTY
201: LSNNSDDESD DAKTQVHART RKPVTKRKRS TEVHKLYERK RRDEFNKKMR ALQDLLPNCY KDDKASLLDE AIKYMRTLQL QVQMMSMGNG LIRPPTMLPM
301: GHYSPMGLGM HMGAAATPTS IPQFLPMNVQ ATGFPGMNNA PPQMLSFLNH PSGLIPNTPI FSPLENCSQP FVVPSCVSQT QATSFTQFPK SASASNLEDA
401: MQYRGSNGFS YYRSPN
Arabidopsis Description
PIL1Transcription factor PIL1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5W8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.