Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000283.1-P | Field mustard | nucleus | 98.79 | 98.79 |
| CDY42809 | Canola | nucleus | 96.13 | 95.89 |
| CDY30375 | Canola | nucleus | 75.54 | 76.85 |
| CDX70453 | Canola | nucleus | 74.09 | 75.18 |
| CDY29961 | Canola | nucleus | 74.09 | 75.18 |
| CDY14866 | Canola | nucleus | 73.12 | 74.94 |
| AT2G43010.5 | Thale cress | extracellular, vacuole | 77.72 | 68.01 |
| CDY00603 | Canola | nucleus, plastid | 40.92 | 61.68 |
| CDY67566 | Canola | nucleus, plastid | 40.92 | 61.68 |
| CDX71916 | Canola | nucleus | 60.53 | 56.43 |
| CDY06026 | Canola | nucleus | 60.05 | 56.11 |
| CDY37185 | Canola | mitochondrion | 10.17 | 42.86 |
| KRH45975 | Soybean | nucleus | 42.86 | 33.71 |
| Os03t0782500-01 | Rice | nucleus | 32.69 | 32.93 |
| Solyc07g043580.2.1 | Tomato | nucleus | 38.74 | 32.32 |
| TraesCS2A01G253900.2 | Wheat | nucleus | 27.84 | 32.12 |
| TraesCS2B01G273500.1 | Wheat | nucleus | 27.84 | 32.12 |
| HORVU5Hr1G102240.3 | Barley | nucleus | 30.75 | 32.07 |
| HORVU2Hr1G060680.1 | Barley | nucleus | 28.09 | 32.04 |
| VIT_12s0028g01110.t01 | Wine grape | nucleus | 42.86 | 31.72 |
| KRG99030 | Soybean | nucleus | 41.89 | 31.63 |
| PGSC0003DMT400041156 | Potato | nucleus | 39.23 | 31.33 |
| KRH73584 | Soybean | nucleus | 42.37 | 31.14 |
| Zm00001d034298_P001 | Maize | nucleus | 31.48 | 30.81 |
| KRH14535 | Soybean | nucleus | 41.89 | 30.78 |
| TraesCS5B01G422000.1 | Wheat | nucleus | 30.27 | 30.49 |
| TraesCS5D01G428400.2 | Wheat | nucleus | 30.51 | 30.14 |
| OQU88421 | Sorghum | nucleus | 28.57 | 28.57 |
| TraesCS5A01G420200.1 | Wheat | nucleus | 29.06 | 28.57 |
| Zm00001d013130_P001 | Maize | nucleus | 26.15 | 27.91 |
| Os07t0143200-01 | Rice | nucleus | 27.6 | 27.54 |
| TraesCS2D01G254400.3 | Wheat | nucleus | 28.09 | 26.98 |
| CDY24734 | Canola | plastid | 8.72 | 25.35 |
| CDY35224 | Canola | nucleus | 15.5 | 24.71 |
| CDY20289 | Canola | nucleus | 12.11 | 23.7 |
| CDY31989 | Canola | nucleus | 27.12 | 23.53 |
| CDY01438 | Canola | nucleus, plastid | 12.35 | 23.39 |
| CDY35220 | Canola | nucleus | 20.82 | 23.18 |
| CDY12804 | Canola | nucleus, plastid | 12.11 | 23.15 |
| CDY05725 | Canola | nucleus | 27.84 | 22.68 |
| CDY06870 | Canola | nucleus | 24.7 | 22.42 |
| CDY65390 | Canola | nucleus | 10.9 | 21.53 |
| CDX67873 | Canola | nucleus | 15.74 | 21.17 |
| CDX91917 | Canola | nucleus | 17.68 | 21.04 |
| CDX83214 | Canola | nucleus | 17.43 | 20.69 |
| CDY06865 | Canola | nucleus | 17.92 | 20.61 |
| CDX69281 | Canola | nucleus, plastid | 17.19 | 20.34 |
| CDY06867 | Canola | nucleus | 23.73 | 20.33 |
| CDY65446 | Canola | nucleus | 16.22 | 20.24 |
| CDY44048 | Canola | nucleus, plastid | 16.46 | 19.94 |
| CDY22448 | Canola | nucleus, plastid | 16.95 | 19.89 |
| CDY06358 | Canola | nucleus | 23.49 | 19.76 |
| CDY22636 | Canola | nucleus | 23.49 | 19.76 |
| CDX75629 | Canola | nucleus | 16.46 | 19.65 |
| CDX74328 | Canola | nucleus | 18.16 | 19.38 |
| CDX94963 | Canola | nucleus | 23.0 | 19.08 |
| CDX80064 | Canola | nucleus | 18.4 | 19.0 |
| CDY46133 | Canola | nucleus | 8.72 | 18.85 |
| CDY64745 | Canola | nucleus | 22.76 | 18.73 |
| CDY21498 | Canola | nucleus | 17.43 | 18.6 |
| CDY66254 | Canola | nucleus | 17.68 | 18.25 |
| CDX83349 | Canola | nucleus | 17.19 | 17.57 |
| CDY11836 | Canola | nucleus | 12.11 | 17.48 |
| CDY28232 | Canola | nucleus | 13.8 | 17.43 |
| CDX68710 | Canola | nucleus | 13.8 | 17.43 |
| CDY11401 | Canola | extracellular | 14.53 | 17.05 |
| CDX76616 | Canola | extracellular | 14.77 | 17.04 |
| KXG37432 | Sorghum | plastid | 19.85 | 17.01 |
| CDY55014 | Canola | nucleus | 11.86 | 16.95 |
| CDX88653 | Canola | nucleus | 12.11 | 16.67 |
| CDY50911 | Canola | nucleus | 10.9 | 16.61 |
| CDY34780 | Canola | nucleus | 13.56 | 16.57 |
| CDY62262 | Canola | nucleus | 12.11 | 16.56 |
| CDY02785 | Canola | nucleus | 11.86 | 16.55 |
| CDY32733 | Canola | nucleus | 11.86 | 16.23 |
| CDX76819 | Canola | nucleus | 13.32 | 16.18 |
| CDX91293 | Canola | nucleus | 11.62 | 16.11 |
| CDY21898 | Canola | nucleus | 11.38 | 15.61 |
| CDY35222 | Canola | nucleus | 21.79 | 15.6 |
| CDY22062 | Canola | nucleus | 11.38 | 15.46 |
| CDY18011 | Canola | nucleus | 11.38 | 15.46 |
| CDX97278 | Canola | nucleus | 11.14 | 15.38 |
| CDY18143 | Canola | nucleus | 11.38 | 15.36 |
| CDX90930 | Canola | nucleus | 11.14 | 14.84 |
| CDX89919 | Canola | nucleus | 11.14 | 14.79 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 6.78 | 13.79 |
| CDY46132 | Canola | endoplasmic reticulum | 4.6 | 10.8 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.1.4 | Gene3D:4.10.280.10 | GO:A0A078D5A8 | EnsemblPlants:CDX83509 | ProteinID:CDX83509 |
| ProteinID:CDX83509.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00139104001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF194 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE1CCE | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaA03g19970D
Coordinates
chrLK031832:-:1864869..1867388
Molecular Weight (calculated)
46376.4 Da
IEP (calculated)
5.722
GRAVY (calculated)
-0.800
Length
413 amino acids
Sequence
(BLAST)
(BLAST)
001: MEHQGWSFEE NYNLFNNRRF IRPQDELVEL LWRDGQVVQQ SQTHRDQTQA QVQAQKPDQE TLRSNTFLED QETVSWIQYP LDEDPFESED FTSPFFSTID
101: PLQRPASEMV KHEAGPVPPD QVMPPPKFRL TDSSSGVREL GKEQYSVMTV GPSHCGSNQS QTDLDVSLTH DPSKTIDERL YSNENSSSGG SSGCSLGKNN
201: KEIACGRSIT ADRKRKHIMD TDESVSQSDA IGNNKSNQRS GSTRRSRAAE VHNLSERRRR DRINERMKAL QELIPNCIKT DKASILEEAI DYLKSLQLQL
301: QVMWMGSGMA GAAATPIMFP GVQPPPPFIR QLQSPVLLPR FPVMDGSAIQ NNPGLVCQNP VQNQVFPDRF GRYVGLFPRM QGTSQPMEMM TFGSPAGQES
401: QRTSAPKTTD GPR
101: PLQRPASEMV KHEAGPVPPD QVMPPPKFRL TDSSSGVREL GKEQYSVMTV GPSHCGSNQS QTDLDVSLTH DPSKTIDERL YSNENSSSGG SSGCSLGKNN
201: KEIACGRSIT ADRKRKHIMD TDESVSQSDA IGNNKSNQRS GSTRRSRAAE VHNLSERRRR DRINERMKAL QELIPNCIKT DKASILEEAI DYLKSLQLQL
301: QVMWMGSGMA GAAATPIMFP GVQPPPPFIR QLQSPVLLPR FPVMDGSAIQ NNPGLVCQNP VQNQVFPDRF GRYVGLFPRM QGTSQPMEMM TFGSPAGQES
401: QRTSAPKTTD GPR
001: MEHQGWSFEE NYSLSTNRRS IRPQDELVEL LWRDGQVVLQ SQTHREQTQT QKQDHHEEAL RSSTFLEDQE TVSWIQYPPD EDPFEPDDFS SHFFSTMDPL
101: QRPTSETVKP KSSPEPPQVM VKPKACPDPP PQVMPPPKFR LTNSSSGIRE TEMEQYSVTT VGPSHCGSNP SQNDLDVSMS HDRSKNIEEK LNPNASSSSG
201: GSSGCSFGKD IKEMASGRCI TTDRKRKRIN HTDESVSLSD AIGNKSNQRS GSNRRSRAAE VHNLSERRRR DRINERMKAL QELIPHCSKT DKASILDEAI
301: DYLKSLQLQL QVMWMGSGMA AAAASAPMMF PGVQPQQFIR QIQSPVQLPR FPVMDQSAIQ NNPGLVCQNP VQNQIISDRF ARYIGGFPHM QAATQPMEML
401: RFSSPAGQQS QQPSSVPTKT TDGSRLDH
101: QRPTSETVKP KSSPEPPQVM VKPKACPDPP PQVMPPPKFR LTNSSSGIRE TEMEQYSVTT VGPSHCGSNP SQNDLDVSMS HDRSKNIEEK LNPNASSSSG
201: GSSGCSFGKD IKEMASGRCI TTDRKRKRIN HTDESVSLSD AIGNKSNQRS GSNRRSRAAE VHNLSERRRR DRINERMKAL QELIPHCSKT DKASILDEAI
301: DYLKSLQLQL QVMWMGSGMA AAAASAPMMF PGVQPQQFIR QIQSPVQLPR FPVMDQSAIQ NNPGLVCQNP VQNQIISDRF ARYIGGFPHM QAATQPMEML
401: RFSSPAGQQS QQPSSVPTKT TDGSRLDH
Arabidopsis Description
PIF4phytochrome interacting factor 4 [Source:TAIR;Acc:AT2G43010]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.