Factsheet for HORVU5Hr1G102240.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G422000.1	Wheat	nucleus	94.44	91.22
TraesCS5D01G428400.2	Wheat	nucleus	94.19	89.23
TraesCS5A01G420200.1	Wheat	nucleus	86.11	81.19
Os03t0782500-01	Rice	nucleus	69.44	67.07
Zm00001d013130_P001	Maize	nucleus	60.35	61.76
Zm00001d034298_P001	Maize	nucleus	65.66	61.61
HORVU2Hr1G060680.1	Barley	nucleus	45.71	50.0
CDY67566	Canola	nucleus, plastid	26.26	37.96
CDY00603	Canola	nucleus, plastid	26.26	37.96
KXG37432	Sorghum	plastid	42.68	35.06
CDY29961	Canola	nucleus	32.32	31.45
CDX70453	Canola	nucleus	32.32	31.45
CDY30375	Canola	nucleus	32.07	31.28
Bra037742.1-P	Field mustard	nucleus	32.07	31.28
CDY14866	Canola	nucleus	31.82	31.27
CDY42809	Canola	nucleus	32.32	30.92
CDX83509	Canola	nucleus	32.07	30.75
Bra000283.1-P	Field mustard	nucleus	32.07	30.75
Bra007430.1-P	Field mustard	nucleus	32.07	29.81
AT3G59060.2	Thale cress	nucleus	32.83	29.28
CDX71916	Canola	nucleus	32.58	29.12
CDY06026	Canola	nucleus	32.32	28.96
Solyc07g043580.2.1	Tomato	nucleus	35.86	28.69
HORVU2Hr1G104040.6	Barley	nucleus	13.38	28.19
KRH45975	Soybean	nucleus	37.37	28.19
AT2G43010.5	Thale cress	extracellular, vacuole	33.33	27.97
PGSC0003DMT400041156	Potato	nucleus	36.11	27.66
VIT_12s0028g01110.t01	Wine grape	nucleus	38.89	27.6
KRG99030	Soybean	nucleus	37.63	27.24
HORVU5Hr1G011780.1	Barley	nucleus	23.23	26.98
KRH73584	Soybean	nucleus	36.87	25.98
KRH14535	Soybean	nucleus	36.62	25.8
HORVU5Hr1G093310.11	Barley	nucleus	28.79	20.84
HORVU7Hr1G026560.2	Barley	nucleus	16.92	19.82
HORVU1Hr1G017900.1	Barley	nucleus	24.49	19.68
HORVU6Hr1G088020.4	Barley	nucleus	14.39	19.26
HORVU7Hr1G030250.5	Barley	nucleus	16.92	16.96
HORVU1Hr1G054260.3	Barley	nucleus	19.19	16.38
HORVU6Hr1G085500.3	Barley	nucleus	14.39	15.75
HORVU5Hr1G106310.3	Barley	nucleus	12.12	15.38
HORVU7Hr1G032420.3	Barley	nucleus	13.13	10.81
HORVU5Hr1G065450.20	Barley	nucleus	11.87	10.09

Protein Annotations

MapMan:15.5.32	MapMan:26.1.1.4	Gene3D:4.10.280.10	EMBL:AK355650	EMBL:AK358551	ncoils:Coil
UniProt:F2CVJ7	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009987
GO:GO:0045893	GO:GO:0046983	GO:GO:0080006	GO:GO:0090229	InterPro:HLH_DNA-bd_sf	EnsemblPlantsGene:HORVU5Hr1G102240
EnsemblPlants:HORVU5Hr1G102240.3	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF194	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00020049DA	InterPro:bHLH_dom	SEG:seg

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CVJ7]

Coordinates

chrchr5H:-:614053998..614059851

Molecular Weight (calculated)

42134.4 Da

IEP (calculated)

6.881

GRAVY (calculated)

-0.654

Length

396 amino acids

Sequence
(BLAST)

001: MDGNGRSAAN HKKPLAADND LVELLWHNGA VVAQPQTHPR PAPGGETAAW FQDDVDVLGN DVYAQLWHNI ATPDVACAAL PGPSSHPPPP PPMRSGIASS
101: WTGGDIGSTF CGSNQVPEVP AGGREEGSAA PPSEGTRGAS TRGTSSSGGS GSNFGGSGLP SESGGRVHKR KGRGKDDSDS RSEDVECEAT EETKSSRRHG
201: SKRRSRAAEV HNQSERRRRD RINEKMRSLQ ELIPHCNKAD KASILDEAIE YLKSLQMQVQ VMWMTSGMAP MMFPGSHQFM PPMAVGMNSA CLPAAQGLNQ
301: MARVPYMNHT LSNHIPMNPS PAMNPMYVAN QMQNIQLREA SNHFLHPDGG LATAPQVAGP YAYTPQVAPK NQIPEVPDCT VVPTSGPGQP PAPDGI

Best Arabidopsis Sequence Match ( AT3G59060.1 )
(BLAST)

001: MEQVFADWNF EDNFHMSTNK RSIRPEDELV ELLWRDGQVV LQSQARREPS VQVQTHKQET LRKPNNIFLD NQETVQKPNY AALDDQETVS WIQYPPDDVI
101: DPFESEFSSH FFSSIDHLGG PEKPRTIEET VKHEAQAMAP PKFRSSVITV GPSHCGSNQS TNIHQATTLP VSMSDRSKNV EERLDTSSGG SSGCSYGRNN
201: KETVSGTSVT IDRKRKHVMD ADQESVSQSD IGLTSTDDQT MGNKSSQRSG STRRSRAAEV HNLSERRRRD RINERMKALQ ELIPHCSRTD KASILDEAID
301: YLKSLQMQLQ VMWMGSGMAA AAAAAASPMM FPGVQSSPYI NQMAMQSQMQ LSQFPVMNRS APQNHPGLVC QNPVQLQLQA QNQILSEQLA RYMGGIPQMP
401: PAGNQTVQQQ PADMLGFGSP AGPQSQLSAP ATTDSLHMGK IG

Arabidopsis Description

PIF5Transcription factor PIF5 [Source:UniProtKB/Swiss-Prot;Acc:Q84LH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.