Factsheet for HORVU5Hr1G065450.20

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72281	Soybean	nucleus, plastid	14.59	54.4
HORVU7Hr1G030250.5	Barley	nucleus	32.62	38.48
CDY46133	Canola	nucleus	15.45	37.7
GSMUA_Achr10P...	Banana	nucleus	31.12	36.25
HORVU6Hr1G085500.3	Barley	nucleus	27.25	35.08
HORVU5Hr1G106310.3	Barley	nucleus	21.46	32.05
CDY20290	Canola	endoplasmic reticulum, extracellular	10.52	24.14
HORVU7Hr1G032420.3	Barley	nucleus	21.03	20.37
HORVU2Hr1G104040.6	Barley	nucleus	8.15	20.21
CDY46132	Canola	endoplasmic reticulum	7.51	19.89
HORVU6Hr1G088020.4	Barley	nucleus	9.87	15.54
HORVU5Hr1G011780.1	Barley	nucleus	10.73	14.66
HORVU7Hr1G026560.2	Barley	nucleus	10.52	14.5
HORVU2Hr1G060680.1	Barley	nucleus	11.16	14.36
HORVU5Hr1G102240.3	Barley	nucleus	10.09	11.87
HORVU5Hr1G093310.11	Barley	nucleus	13.3	11.33
HORVU1Hr1G017900.1	Barley	nucleus	11.16	10.55
HORVU1Hr1G054260.3	Barley	nucleus	9.87	9.91

Protein Annotations

EnsemblPlants:HORVU5Hr1G065450.20	EnsemblPlantsGene:HORVU5Hr1G065450	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR16223
PANTHER:PTHR16223:SF28	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI000B478BC0	UniProt:A0A287RK44	MapMan:15.5.32	:	:	:

Description

No Description!

Coordinates

chrchr5H:+:500879396..500882328

Molecular Weight (calculated)

49257.7 Da

IEP (calculated)

12.188

GRAVY (calculated)

-0.691

Length

466 amino acids

Sequence
(BLAST)

001: MQAMAAAGQI SLDDLRSGHA GAANGAGAGV YDDFLDQMFG SLPPSAWHDL AAGTKPEDGA QADGMQQQLF GGPYDESVML ASRLRQHQIG GGPGGAAASA
101: KQMVLQQLAD LRQGHHNNML LQGMGRSPSI GGGGGDGGLL LPLTLGNGGS GGDVQALLKA AANSAVLILR DAGVFGGFAG SLQQQQHFQP HPQQTAPMPS
201: QTFGGVGGAP GGGSQPQQQA GGGGGGAPAP PRQRVRARRG QATDPHSIAE RLRRERIAER MKALQELVPN ANKVMQTDKA TMLDEIIDYV KFLQLQVKAD
301: VYANTHAGAE HEPAGWRRCR RAARGRHVLG GNPRSPLARA RRRGGRERWP DGDGAAGGQA DGGGHGRRHA VPAGEGPLPH ARLPRLRHLL RHVPAPPPGG
401: RGRGPLHRRA AHERRHAHGR RRRRRAGVAE HVRAHGAVGH GQRRRRVRQR RRGVASQGRR VRLQAV

Best Arabidopsis Sequence Match ( AT2G24260.2 )
(BLAST)

001: MNQQGQTQTQ TQPQASASTA TGGTVAAPPQ SRTKIRARRG QATDPHSIAE RLRRERIAER MKALQELVPN GNKTDKASML DEIIDYVKFL QLQVKVLSMS
101: RLGGAASVSS QISEAGGSHG NASSAMVGGS QTAGNSNDSV TMTEHQVAKL MEEDMGSAMQ YLQGKGLCLM PISLATAIST ATCHSRNPLI PGAVADVGGP
201: SPPNLSGMTI QSTSTKMGSG NGKLNGNGVT ERSSSIAVKE AVSVSKA

Arabidopsis Description

BHLH66Transcription factor bHLH66 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.