Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G391100.1 | Wheat | nucleus | 94.2 | 94.99 |
| TraesCS6D01G341200.1 | Wheat | nucleus | 93.65 | 94.69 |
| TraesCS6A01G358400.3 | Wheat | nucleus | 91.44 | 85.31 |
| KRH72281 | Soybean | nucleus, plastid | 19.89 | 57.6 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 25.41 | 45.32 |
| CDY46132 | Canola | endoplasmic reticulum | 21.82 | 44.89 |
| OQU89497 | Sorghum | nucleus | 53.04 | 41.29 |
| HORVU7Hr1G030250.5 | Barley | nucleus | 44.75 | 41.01 |
| HORVU5Hr1G106310.3 | Barley | nucleus | 33.43 | 38.78 |
| CDY46133 | Canola | nucleus | 18.23 | 34.55 |
| HORVU5Hr1G065450.20 | Barley | nucleus | 35.08 | 27.25 |
| HORVU7Hr1G032420.3 | Barley | nucleus | 33.7 | 25.36 |
| HORVU2Hr1G104040.6 | Barley | nucleus | 12.15 | 23.4 |
| HORVU6Hr1G088020.4 | Barley | nucleus | 14.64 | 17.91 |
| HORVU7Hr1G026560.2 | Barley | nucleus | 15.19 | 16.27 |
| HORVU5Hr1G011780.1 | Barley | nucleus | 14.92 | 15.84 |
| HORVU2Hr1G060680.1 | Barley | nucleus | 15.19 | 15.19 |
| HORVU5Hr1G102240.3 | Barley | nucleus | 15.75 | 14.39 |
| HORVU5Hr1G093310.11 | Barley | nucleus | 17.68 | 11.7 |
| HORVU1Hr1G054260.3 | Barley | nucleus | 14.92 | 11.64 |
| HORVU1Hr1G017900.1 | Barley | nucleus | 15.47 | 11.36 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G085500.3 | EnsemblPlantsGene:HORVU6Hr1G085500 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR16223 |
| PANTHER:PTHR16223:SF28 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI000B47E3BF | UniProt:A0A287V0U4 | MapMan:15.5.32 | : | : | : |
Description
No Description!
Coordinates
chrchr6H:-:558901180..558905590
Molecular Weight (calculated)
37277.8 Da
IEP (calculated)
5.679
GRAVY (calculated)
-0.431
Length
362 amino acids
Sequence
(BLAST)
(BLAST)
001: MQPTGREMHG GGQGQGQGQD DFFEQMLSAL PTAWAELGSV RPPWELHAAG APPPDADPAF DESALLASRL RHNQISGGGG DDKPPPALLP RLGLDAGGFL
101: PLPLPLFTDR SREDLQGATQ ALFDGFGAAG LHAAAQPPFG QAGSMPPPAA QGGGAAAAPP RQRQRARRGQ ATDPHSIAER LRRERIAERM KALQELVPSA
201: NKTDKASMLD EIIDYVKFLQ LQVKVLSMSR LGGAAAVGPL AAGLSSESSG NGNGTSSSGD GNGEDNNGGS TLRATEQQVA RLMEEDMGTA MQYLQGKGLC
301: LMPISLASVI SSATSSSLRS ATRPAGNAGG PLHEGGSPAS PRLVNSGVSV DGSRTIGDDG RQ
101: PLPLPLFTDR SREDLQGATQ ALFDGFGAAG LHAAAQPPFG QAGSMPPPAA QGGGAAAAPP RQRQRARRGQ ATDPHSIAER LRRERIAERM KALQELVPSA
201: NKTDKASMLD EIIDYVKFLQ LQVKVLSMSR LGGAAAVGPL AAGLSSESSG NGNGTSSSGD GNGEDNNGGS TLRATEQQVA RLMEEDMGTA MQYLQGKGLC
301: LMPISLASVI SSATSSSLRS ATRPAGNAGG PLHEGGSPAS PRLVNSGVSV DGSRTIGDDG RQ
001: MENGNGEGKG EFINQNNDFF LDSMSMLSSL PPCWDPSLPP PPPPPQSLFH ALAVDAPFPD QFHHPQESGG PTMGSQEGLQ PQGTVSTTSA PVVRQKPRVR
101: ARRGQATDPH SIAERLRRER IAERMKSLQE LVPNTNKTDK ASMLDEIIEY VRFLQLQVKV LSMSRLGGAG SVGPRLNGLS AEAGGRLNAL TAPCNGLNGN
201: GNATGSSNES LRSTEQRVAK LMEEDMGSAM QYLQGKGLCL MPISLATAIS SSTTHSRGSL FNPISSAVAA EDSNVTATAV AAPEASSTMD DVSASKA
101: ARRGQATDPH SIAERLRRER IAERMKSLQE LVPNTNKTDK ASMLDEIIEY VRFLQLQVKV LSMSRLGGAG SVGPRLNGLS AEAGGRLNAL TAPCNGLNGN
201: GNATGSSNES LRSTEQRVAK LMEEDMGSAM QYLQGKGLCL MPISLATAIS SSTTHSRGSL FNPISSAVAA EDSNVTATAV AAPEASSTMD DVSASKA
Arabidopsis Description
BHLH82LRL3 [Source:UniProtKB/TrEMBL;Acc:A0A178UI77]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.