Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU5Hr1G068110.1 | |
| HORVU7Hr1G054880.1 | |
| HORVU7Hr1G077270.3 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G357700.1 | Wheat | nucleus | 87.5 | 87.21 |
| TraesCS6B01G411300.1 | Wheat | nucleus | 89.19 | 87.13 |
| TraesCS6A01G373500.2 | Wheat | nucleus | 89.19 | 87.13 |
| Os02t0805250-00 | Rice | nucleus | 55.07 | 58.21 |
| KXG31309 | Sorghum | nucleus | 55.41 | 56.16 |
| CDY37185 | Canola | mitochondrion | 17.91 | 54.08 |
| Zm00001d018416_P001 | Maize | mitochondrion | 53.04 | 47.58 |
| KRH04711 | Soybean | plastid | 16.89 | 31.25 |
| AT5G67110.1 | Thale cress | nucleus | 20.27 | 28.57 |
| KRH04595 | Soybean | nucleus | 26.01 | 28.31 |
| KRH28453 | Soybean | nucleus | 27.7 | 28.18 |
| KRH05665 | Soybean | nucleus | 27.7 | 27.61 |
| CDY24734 | Canola | plastid | 13.18 | 27.46 |
| KRH15381 | Soybean | nucleus | 27.36 | 27.27 |
| Bra012133.1-P | Field mustard | nucleus, plastid | 19.59 | 27.1 |
| HORVU7Hr1G026560.2 | Barley | nucleus | 30.41 | 26.63 |
| CDY01438 | Canola | nucleus, plastid | 19.59 | 26.61 |
| HORVU2Hr1G104040.6 | Barley | nucleus | 16.89 | 26.6 |
| CDY12804 | Canola | nucleus, plastid | 19.26 | 26.39 |
| PGSC0003DMT400020534 | Potato | nucleus | 25.68 | 24.2 |
| Solyc04g078690.2.1 | Tomato | nucleus | 25.0 | 23.57 |
| Bra010591.1-P | Field mustard | nucleus, plastid | 27.03 | 23.46 |
| CDY44048 | Canola | nucleus, plastid | 27.03 | 23.46 |
| VIT_18s0001g10270.t01 | Wine grape | nucleus | 29.05 | 23.31 |
| CDY22448 | Canola | nucleus, plastid | 27.7 | 23.3 |
| KRH77016 | Soybean | nucleus | 29.05 | 22.93 |
| CDX69281 | Canola | nucleus, plastid | 27.03 | 22.92 |
| VIT_07s0031g00450.t01 | Wine grape | nucleus, plastid | 30.07 | 22.59 |
| Bra011740.1-P | Field mustard | nucleus, plastid | 26.69 | 22.32 |
| CDX75629 | Canola | nucleus | 26.01 | 22.25 |
| Solyc02g093280.2.1 | Tomato | nucleus | 27.7 | 21.69 |
| PGSC0003DMT400010253 | Potato | nucleus | 27.36 | 21.54 |
| AT4G36930.1 | Thale cress | nucleus | 27.03 | 21.45 |
| GSMUA_Achr7P20810_001 | Banana | nucleus | 39.53 | 19.53 |
| HORVU5Hr1G011780.1 | Barley | nucleus | 20.61 | 17.89 |
| HORVU2Hr1G060680.1 | Barley | nucleus | 21.28 | 17.4 |
| HORVU5Hr1G106310.3 | Barley | nucleus | 15.88 | 15.06 |
| HORVU6Hr1G085500.3 | Barley | nucleus | 17.91 | 14.64 |
| HORVU5Hr1G102240.3 | Barley | nucleus | 19.26 | 14.39 |
| HORVU1Hr1G054260.3 | Barley | nucleus | 20.95 | 13.36 |
| HORVU5Hr1G093310.11 | Barley | nucleus | 24.66 | 13.35 |
| HORVU7Hr1G030250.5 | Barley | nucleus | 16.89 | 12.66 |
| HORVU1Hr1G017900.1 | Barley | nucleus | 18.92 | 11.36 |
| HORVU7Hr1G032420.3 | Barley | nucleus | 16.22 | 9.98 |
| HORVU5Hr1G065450.20 | Barley | nucleus | 15.54 | 9.87 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G088020.4 | EnsemblPlantsGene:HORVU6Hr1G088020 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF306 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI0002958839 | UniProt:M0Y3U6 | MapMan:15.5.32 | : | : | : |
Description
No Description!
Coordinates
chrchr6H:+:565624069..565627122
Molecular Weight (calculated)
32894.1 Da
IEP (calculated)
8.176
GRAVY (calculated)
-0.700
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQEHLEFIM RHHAHQGGMG FVPADRGDSE EALGSSESEP AGRPRGKRAR AAEVHNLSEK RRRCKINEKM KALQSLVPNS SKTDKASMLD DAIEYLKHLQ
101: LQVQMLSMRN GVYRPSVNLP GPPDHLPTSQ MCAALNQNSV DASSNPPAAM LPMNHFLGAM SGSRHPFGPP NQDRPRHDPL VLSSVPCTIT REPPFLLGTS
201: QESHLRSLQL TVSAEMIFQE EAMLKQRLSS TQETTSLPAH EMKPVRQEAG HFDTSSIWKN QSQNMLPSNP ESALFVPHLR RFQNSNADSG LRAESK
101: LQVQMLSMRN GVYRPSVNLP GPPDHLPTSQ MCAALNQNSV DASSNPPAAM LPMNHFLGAM SGSRHPFGPP NQDRPRHDPL VLSSVPCTIT REPPFLLGTS
201: QESHLRSLQL TVSAEMIFQE EAMLKQRLSS TQETTSLPAH EMKPVRQEAG HFDTSSIWKN QSQNMLPSNP ESALFVPHLR RFQNSNADSG LRAESK
001: MISQREEREE KKQRVMGDKK LISSSSSSSV YDTRINHHLH HPPSSSDEIS QFLRHIFDRS SPLPSYYSPA TTTTTASLIG VHGSGDPHAD NSRSLVSHHP
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT
Arabidopsis Description
SPTSPT [Source:UniProtKB/TrEMBL;Acc:A0A178UVX7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.